PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0043.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 602aa    MW: 66396.9 Da    PI: 7.5574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-08258278526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f++ G C+ Gd+C +aHg
  Bostr.23794s0043.1.p 258 PCPEFRK-GSCPKGDSCEYAHG 278
                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002044.22E-1322172No hitNo description
SuperFamilySSF484034.48E-1522156IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-1624175IPR020683Ankyrin repeat-containing domain
SMARTSM002484.4E-474104IPR002110Ankyrin repeat
PROSITE profilePS5029713.70874155IPR020683Ankyrin repeat-containing domain
PfamPF136378.6E-975127No hitNo description
SMARTSM002484109141IPR002110Ankyrin repeat
PROSITE profilePS5010313.976253280IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5253279IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5258278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5258279IPR000571Zinc finger, CCCH-type
SMARTSM0035637288311IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.549288312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MCGAKSNLCS SKTLTEVEFM SQKSEEGATC LLEFAACDDL SSFKREIEDK SSVDIDETGF  60
WYCRRVGSKK MGFEERTPLM VAAMYGSIEV LNYIIATGKS DVNRVCSDEK VTALHCAVSG  120
CSVSIVEIIK ILLDASASPN CVDANGNKPV DLLVKASRFV PNQSRKAVEV LLTGNHGLVS  180
LMEAEEEVKS VVTKYPADAS LPDINEGVYG TDDFRMFSFK VKPCSRAYSH DWTECPFVHP  240
GENARRRDPR KYPYTCVPCP EFRKGSCPKG DSCEYAHGVF ESWLHPAQYR TRLCKDETGC  300
ARRVCFFAHR REELRPVNAS TGSAMVSPRS SNQSPEMPVM SPLTLGSSPM NSPMANSGVP  360
LSPRNGGLWQ NRVNSLTPPP LQLNGSRLKS TLSARDMDME MELRFRGLDN RRLGDLKPSN  420
LEETFGSYDS SSVMQLQSPS RHSQMNHYPS SPVRQPPPHG FESSAAMAAA VMNARSSAFA  480
KRSLSFKPPP VASSNVSDWG SPNGKLEWGM QREELNKLRR SASFGIHGNN NNSVSRPARD  540
YSDEPDVSWV NSLVKENAPE RAFGLSERVG NTVNGAAGRD KYKLPSWAEQ MYIDHEQQIV  600
A*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0043.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883942.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLR0HRW60.0R0HRW6_9BRAS; Uncharacterized protein
STRINGBostr.23794s0043.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein