PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.23794s0246.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 72aa MW: 8395.69 Da PI: 8.4762

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.23794s0246.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.2	2.3e-13	5	70	1	66
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAe 66 +C++C +++++ ++dC++a f + p kf++v+ +F+ ++++ +lk+l++ +r ++++ + eA+ Bostr.23794s0246.1.p 5 QCEVCTFQNKQYVNDCIFASLFTSYGPYKFNVVNAIFRLETLTFFLKDLSPMQRIFTTRTFYLEAK 70 6************************************************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.716	4	71	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-11	5	70	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
MNPNQCEVCT FQNKQYVNDC IFASLFTSYG PYKFNVVNAI FRLETLTFFL KDLSPMQRIF 60 TTRTFYLEAK S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.23794s0246.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001326100.1	3e-26	LOB domain-containing protein 26
Refseq	NP_001326101.1	3e-26	LOB domain-containing protein 26
Refseq	NP_189433.1	3e-26	LOB domain-containing protein 26
Swissprot	Q9LIJ0	2e-27	LBD26_ARATH; LOB domain-containing protein 26
TrEMBL	A0A178VCA6	3e-26	A0A178VCA6_ARATH; LBD26
STRING	Bostr.23794s0246.1.p	8e-46	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21012	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27940.1	9e-30	LOB domain-containing protein 26

Link Out ? help Back to Top
Phytozome	Bostr.23794s0246.1.p