PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0302.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 305aa    MW: 34201.3 Da    PI: 8.5707
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0302.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163961123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C + F++   L  H+++H
  Bostr.23794s0302.1.p 39 YTCSFCRREFRSAQALGGHMNVH 61
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-63665No hitNo description
PROSITE profilePS5015711.2193966IPR007087Zinc finger, C2H2
PfamPF139122.0E-53962IPR007087Zinc finger, C2H2
SMARTSM003550.00613961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEKPGGFWIP KKGNKESSWE ELAFAEDDAA GSLWPPRSYT CSFCRREFRS AQALGGHMNV  60
HRRDRARLKQ ADDQYLFSKS SSPPEYPSHN DSDDIREASS YTLVFDSKPN YFKTQHSCVI  120
DLSSSFSLPY LTPSRVSSGL PGKQNASSSS PSFVVEPSKN SKKIPSSSPW SCPSTFVEQK  180
RCDLYEIPVM EGDKKRKIES DVPKIEHKAK LSLGNSTDLS VSMNLVIHQS FPITAHGSDE  240
EIGRGDIRKR RRRHESPSQP SIFISSLSCK SDIITRKEEI KHKGDRFEDL DLELRLGTDP  300
PKGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-133461229superman protein
2l1o_A3e-133461229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0302.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517050.10.0PREDICTED: uncharacterized protein LOC104792567
SwissprotO809420.0ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A178VU740.0A0A178VU74_ARATH; ZFP10
STRINGBostr.23794s0302.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-157zinc-finger protein 10