PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0312.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 726aa    MW: 82061.9 Da    PI: 6.8614
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0312.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.96.2e-1163517201374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lLl+cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P
  Bostr.23794s0312.1.p 351 LRSLLLHCAQAVAADDRRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKEIVSKPRS---AAAVLKAHQLFLACCP 436
                           689***************************************************************9999...999************* PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           + k+s++++N++I + v +++rvH+iDf+i +G+QWp+L++ ++    g+p++RiTg++ p++g   ++++eetg+rLa +A+++gvpf
  Bostr.23794s0312.1.p 437 FRKLSYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHRFSI--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKHFGVPF 523
                           ********************************************8..8***************9************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           e+++ +ak++++++le+L+++++E+++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s
  Bostr.23794s0312.1.p 524 EYKA-IAKKWDAIQLEDLDIDRDEVIIVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFS 611
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           ++fd+le+ +pre+eer+++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+a + +++++ + + ++++
  Bostr.23794s0312.1.p 612 SIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHIRAMRSGLVQVPFDPSIMKTALHKVHTFYHKDFVIDQD 700
                           ********************************************************************************888****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           + +l++gWk+r+++++S+W+
  Bostr.23794s0312.1.p 701 NRWLLQGWKGRTVMALSVWK 720
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.098325700IPR005202Transcription factor GRAS
PfamPF035142.2E-113351720IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MITEPGLIGI SGAINRNRLP DQSTSLLPIH TFTPVTLYDG FNYNLSSDHR NTVAERPENS  60
VFIREVEEEE EDPADAFDFS DAVLGYISQM LNEEDMDDKV CMLQESLDLE AAERSLYEAI  120
GKKYPPSPDR NLASFAERNG ENLDRVVPGN YTGGDCTGFW NGGIKPLSGG FTLDFRNPQS  180
RRSSVQSVPQ SNGLVTIYGD ETDESSKNSL YTDSNRKSNQ SVWLFRRGIE EASRFLPEQN  240
ELIVNFREES CRTKGRKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGEDS  300
MKEFNALREV LKKGVDKKKA SVAQGGKRRA RGRGRGRGGG GHNGKKEVVD LRSLLLHCAQ  360
AVAADDRRCA GQLLKQIRQH STPFGDGNQR LAHCFANGLE ARLAGTGSQI YKEIVSKPRS  420
AAAVLKAHQL FLACCPFRKL SYFITNKTIR DLVGNSQRVH VIDFGILYGF QWPTLIHRFS  480
IYGSPKVRIT GIEFPQPGFR PAQRVEETGQ RLAAYAKHFG VPFEYKAIAK KWDAIQLEDL  540
DIDRDEVIIV NCLYRAENLH DESVKVESCR DTVLNLIGKI NPDLFVFGIV NGAYNAPFFV  600
TRFREALFHF SSIFDMLETI VPREDEERMF LEMEVFGREA LNVIACEGWE RVERPETYKQ  660
WHIRAMRSGL VQVPFDPSIM KTALHKVHTF YHKDFVIDQD NRWLLQGWKG RTVMALSVWK  720
PDSKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-4435772325382Protein SCARECROW
5b3h_A1e-4335772324381Protein SCARECROW
5b3h_D1e-4335772324381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328337RARGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0312.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296472.10.0scarecrow-like protein 9 isoform X1
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLR0HVC00.0R0HVC0_9BRAS; Uncharacterized protein
STRINGBostr.23794s0312.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein