PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.23794s0377.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

S1Fa-like

Protein Properties

Length: 77aa MW: 8192.98 Da PI: 10.7983

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.23794s0377.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	135.2	1.6e-42	9	76	3	70
S1FA 3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +a veakGlnPGlivllvvggll++fl++ny++y+yaqknlPP+kkkP+skkklkreklkqGv+vPGe Bostr.23794s0377.1.p 9 KAVVEAKGLNPGLIVLLVVGGLLVTFLIANYVMYMYAQKNLPPKKKKPISKKKLKREKLKQGVPVPGE 76 7889***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	0.001	12	76	No hit	No description
Pfam	PF04689	3.4E-38	13	76	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MSSEGSAGKA VVEAKGLNPG LIVLLVVGGL LVTFLIANYV MYMYAQKNLP PKKKKPISKK 60 KLKREKLKQG VPVPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.23794s0377.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF372892	8e-93	AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds.
GenBank	BT002669	8e-93	BT002669.1 Arabidopsis thaliana At2g37120/T2N18.12 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296264.1	5e-45	DNA-binding protein S1FA2
Swissprot	Q42337	2e-30	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	R0G194	1e-43	R0G194_9BRAS; Uncharacterized protein
STRING	Bostr.23794s0377.1.p	6e-45	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23806	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37120.1	9e-15	S1FA-like DNA-binding protein

Link Out ? help Back to Top
Phytozome	Bostr.23794s0377.1.p