PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0389.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 431aa    MW: 48987.6 Da    PI: 6.5167
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0389.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07314361448
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           WT +E  +lvd++  +G g W+ I + +     +Rt+ +++++w+++l
  Bostr.23794s0389.1.p 314 WTVDEVMKLVDGISHFGVGKWTDIKNLFFhsaAHRTPIDIRDKWRNLL 361
                           **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-12306368IPR009057Homeodomain-like
PROSITE profilePS5129414.649306365IPR017930Myb domain
SMARTSM007172.4E-7310363IPR001005SANT/Myb domain
CDDcd116603.95E-19312362No hitNo description
SuperFamilySSF466892.47E-16312375IPR009057Homeodomain-like
PfamPF139214.6E-7314368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MRSSFVNLAL FKHGLDLNVD FWDARTPDFP ETFAGLKCES VDENVCHSNE YKMSDMKHFL  60
MEPKHDNTAV DSFLGLGMEN MGLSSTMEEF SHGFDFSFLP DYGGLDSCST QDVEAGLKFE  120
ILDGFLDEVD EVEDIYASHD LSSIGNHILP ETEVKKISEL DGETYGLTNF RSESYSPGIS  180
GSIGLSEWSK ETIPLAESQN VSSEKLKDSL DSNESEDDKK PLSTFIGSWV KRGKNRKKNL  240
LNTAYSRLDS SGERMSCVSY DFRPRKGPMK KYMHTSTENT FSDDQLTSSE SEDDISVTKT  300
SRTRSDRRKH QRMWTVDEVM KLVDGISHFG VGKWTDIKNL FFHSAAHRTP IDIRDKWRNL  360
LKASYNDKHN DGEAEERRKS VARPIPKDVL HRVRELASLH PYPFSKSSCF VHDSSRSRST  420
SKKKKKKKRS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-13299393590Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422428KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0389.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304480.0AK230448.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-48-F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516938.20.0PREDICTED: uncharacterized protein LOC104792482 isoform X2
RefseqXP_010516939.10.0PREDICTED: uncharacterized protein LOC104792482 isoform X4
RefseqXP_010516940.10.0PREDICTED: uncharacterized protein LOC104792482 isoform X4
TrEMBLA0A178VNS90.0A0A178VNS9_ARATH; TRFL8
TrEMBLF4IPY70.0F4IPY7_ARATH; TRF-like 8
STRINGBostr.23794s0389.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.12e-20TRF-like 3