PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0397.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 741aa    MW: 81978.9 Da    PI: 6.6484
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0397.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-085799347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Bostr.23794s0397.1.p 57 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 99
                          6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1049104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-552102IPR009057Homeodomain-like
PROSITE profilePS5129313.5253104IPR017884SANT domain
SMARTSM007175.1E-654102IPR001005SANT/Myb domain
CDDcd001671.21E-557100No hitNo description
PfamPF002493.1E-65799IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MLKPFAHYCE MQAEQKPEGP IDEGRISNQN SNPNLLSSAS ASVAQFPAKK PTRQWAAWTH  60
QEEESFFTAL RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LSLDAKNPKD  120
TNAAMLRWWS LLEKYSCKAS KLHLKPRRFK LFIEALEHQL LKDRRKSIRK RACHGENFSS  180
ASLRNISSHS RERGLDNRPF KLILSDGQNV KKLGSGRAST KHGESLGVNL GDEKEDTAFG  240
RGGRQRRKQG YRKWEKAVMD GVSLVADAAE HLERTSICKD MDDQKDLGST RYLTGKSPLS  300
LCSSGAVPLS DANMQFSAKL KLQLFPIDEC TRRSLEMDKH NPHLELTLSN RKKLSSVLEH  360
LNRKWGSSSC ATGELMLFPY NARKETVTCH QRWTHDSFLS AAEVYSMVGS PSVFRLRYGW  420
FVHDASGSFI SQVPTSDPCP SLEDDMNVDG VNEVNMLLTE SGPLSVHSTA EQPTSVEPSL  480
GLVCASGETH DRPAESRDDY EPASATMTPL EHLSSGNAQS AGEWADSLTN ISIGDLLSEV  540
PDDIDSDGVD PPATEGSHCL LRDVPFASDS FDAAIAAHIL RHQNKPSALL PLTSGSSSLW  600
DDEETRDAFS FQKNRLADSS KLANVASPGG VGRVNGKPSQ LVEASVDEKL PDHVEPMEEG  660
PTDPHTMDSP GKTHCGLADI YWPDSLGPLD LDIRSSKYTE DLILSESLGG LSRLIATSLD  720
AFQNCSLFGF DNKKDKSNMV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0397.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509412.20.0PREDICTED: TSL-kinase interacting protein 1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLD7LJ990.0D7LJ99_ARALL; Tsl-kinase interacting protein 1
STRINGBostr.23794s0397.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1