PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.23794s0459.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

GeBP

Protein Properties

Length: 315aa MW: 35806.8 Da PI: 4.4128

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.23794s0459.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	109.5	2.4e-34	53	147	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +++ ws++De+v+L G++d++++t+ s+ +d+dafy+++k+s+++ +sk+ql++K+++LK+Kf+ +++++++gke sf+ ++d++if+l Bostr.23794s0459.1.p 53 SKMNWSKNDELVILGGIVDYENETELSYRSDWDAFYRYIKGSVEASFSKKQLIDKVKHLKRKFTYNQARSNDGKELSFTDTDDDEIFKL 141 7899*********************************************************************************** PP DUF573 92 skkiWg 97 s++iW Bostr.23794s0459.1.p 142 SMRIWA 147 ***6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.1E-26	55	146	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MVATKRLGNY SGSNSDDSLT RNGDDGVEAM LRKRKQRKTT TTTTTTLVPS SASKMNWSKN 60 DELVILGGIV DYENETELSY RSDWDAFYRY IKGSVEASFS KKQLIDKVKH LKRKFTYNQA 120 RSNDGKELSF TDTDDDEIFK LSMRIWANNE DMDQAKDVPC AEQESKENKD VLCAEQEDKD 180 VPCAEQERVS IEIDNGEKEK SEEDGVEELY VQEETLESGI SFQNLGKNGE KEKSEEDGVD 240 ELGVLQEILE ADTFFQNLGS RYQQKLMLKN LENVGVERRK ELIDEWKALC AEEMQLFIKK 300 LTFFAKLANG GVSP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.23794s0459.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884572.1	1e-154	GLABROUS1 enhancer-binding protein-like 3 isoform X4
Swissprot	Q9SJM4	1e-117	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	R0FWQ6	1e-132	R0FWQ6_9BRAS; Uncharacterized protein
STRING	Bostr.23794s0459.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	1e-127	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bostr.23794s0459.1.p

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]