PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0547.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family BBR-BPC
Protein Properties Length: 222aa    MW: 24397.9 Da    PI: 10.4223
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0547.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind271.73.7e-8330221108301
             GAGA_bind 108 idslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksid 195
                            +s   ls+   +++a++ +  ++ l+++p+++ +++++++k+k+ +q+++k++++k  +kk+  ++s+k+++++s  +++k ekk++d
  Bostr.23794s0547.1.p  30 FHSCIDLSQISQANPAEDvMVLQSRLSHPPTRDYRNSMETVKQKSMNQSPSKALKPKPPRKKR--SASNKSKTAPSI-PETKCEKKNLD 115
                           23322233333334444558889999*************************999999998888..677788888887.69********* PP

             GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvD 284
                           ++++  s+D+st+P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL++La+eGy+ls+pvD
  Bostr.23794s0547.1.p 116 INIDISSFDTSTVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLAGEGYNLSHPVD 204
                           ***************************************************************************************** PP

             GAGA_bind 285 LkdhWAkHGtnkfvtir 301
                           Lk+hWA+HGtnkfvti+
  Bostr.23794s0547.1.p 205 LKNHWARHGTNKFVTIK 221
                           ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.8E-981221IPR010409GAGA-binding transcriptional activator
PfamPF062178.6E-7156221IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MNSFPSQNLM LSATNANKDA DLRTSNAHWF HSCIDLSQIS QANPAEDVMV LQSRLSHPPT  60
RDYRNSMETV KQKSMNQSPS KALKPKPPRK KRSASNKSKT APSIPETKCE KKNLDINIDI  120
SSFDTSTVPP PVCSCTGVSR VCYKWGMGGW QSSCCTISIS TYPLPMSTTR PGARLAGRKM  180
SNGAYVKLLA RLAGEGYNLS HPVDLKNHWA RHGTNKFVTI K*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0547.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0899610.0EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294940.11e-138protein BASIC PENTACYSTEINE7
SwissprotO822861e-136BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLR0HUS91e-137R0HUS9_9BRAS; Uncharacterized protein
STRINGBostr.23794s0547.1.p1e-165(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-123basic pentacysteine 7