PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0560.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 254aa    MW: 27867.9 Da    PI: 8.8075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0560.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.81.8e-13145170126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt++C+ +  tG+C++G +C+FaHg
  Bostr.23794s0560.1.p 145 WKTRICNKWEITGYCPFGTNCHFAHG 170
                           8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.3E-1463100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-66598IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-46693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5826694IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-17139174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-10141175IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-8144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216144172IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10145170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSHRRDSGSD VVHVRTTNDP PPENWFPNSV WATEDDYNRI WAINPDDAES SSKKIRSSSS  60
EIGKSFFKTK LCFKFRAGTC PYAASSCHFA HSSEELRRPP PPNRQETATE ASRNRESFAI  120
SLGPRGYGAA SDSGNVAQTL KPPNWKTRIC NKWEITGYCP FGTNCHFAHG ASELHRFGGG  180
LVEGEGKIGT STTPDTKQTG LVDTVTGLVS SGVPSQRTSS AVMQKPNGVR TQRKWKGPDK  240
ISRVYGDWID DIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0560.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0202321e-125BT020232.1 Arabidopsis thaliana At2g35430 gene, complete cds.
GenBankBT0205531e-125BT020553.1 Arabidopsis thaliana At2g35430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516719.11e-154PREDICTED: zinc finger CCCH domain-containing protein 28-like
SwissprotQ5PP651e-137C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLD7LHW11e-148D7LHW1_ARALL; Zinc finger (CCCH-type) family protein
STRINGBostr.23794s0560.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-120C3H family protein