PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0620.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 434aa    MW: 46888.5 Da    PI: 5.1407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-31222280259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Bostr.23794s0620.1.p 222 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 280
                           699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-31216282IPR003657WRKY domain
PROSITE profilePS5081133.109216282IPR003657WRKY domain
SuperFamilySSF1182902.75E-26219282IPR003657WRKY domain
SMARTSM007741.4E-37221281IPR003657WRKY domain
PfamPF031069.0E-26223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MCSVFGLLNM DNFQGDLTDV VRGIGSGHVS SPGPQEGPSR SSMSPPTSDL YVDFPTAAAS  60
VSCLTSPFGD PFVSMTDPLL HLAANSGYLP GAGDNKSNNS FAIFPKGFED DHIKSQCSVF  120
PRIRISQTNI IRDASTCNSP AIPVSDAPAS PWGMISVDTT NSPRNCLLAD NNNNTSSSSQ  180
IQISSSPRNL GIKRRKSQTK KVVCIPAPAA LNSRSSGEVV PSDLWAWRKY GQKPIKGSPY  240
PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRSSSSSSS  300
NPSSKSSTET VAATTSPSSR VSQNINNKDE PNKSHLPSSS TPYAAAAIKE ENVEERHDNM  360
EFDNDIEDTD RQELLPEFQH QPEDLFADLD ELEGDSLAML LSHSSSGGNM ENKMSIPDVF  420
SDFFDDEDSS RSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25196283280Disease resistance protein RRS1
5w3x_D2e-25196283280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4048630.0AF404863.1 Arabidopsis thaliana WRKY transcription factor 35 (WRKY35) mRNA, complete cds.
GenBankBT0292390.0BT029239.1 Arabidopsis thaliana At2g34830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504968.10.0PREDICTED: probable WRKY transcription factor 35
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLR0HCF30.0R0HCF3_9BRAS; Uncharacterized protein
STRINGBostr.23794s0620.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.10.0WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]