PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0753.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 269aa    MW: 30821.8 Da    PI: 9.1749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0753.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.6e-50151371128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+d++k++PwdLp      ++e yfFs+r+ ky++g+r+nr+t sgyWkatg d
  Bostr.23794s0753.1.p  15 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPETDVCKSDPWDLPGD---CDSERYFFSTREAKYPNGNRSNRSTGSGYWKATGID 99 
                           79****************************.99***************44...47899******************************* PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++ + k+ +vg+kktLvfykg+ pkg++t+Wv+heyrl
  Bostr.23794s0753.1.p 100 KQIGK-KKIVVGIKKTLVFYKGKPPKGTRTNWVLHEYRL 137
                           ***99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-6110160IPR003441NAC domain
PROSITE profilePS5100556.86615160IPR003441NAC domain
PfamPF023657.3E-2716137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEKPSSIKNR GVLRLPPGFR FHPTDEELVV QYLRRKVTGL PLPASVIPET DVCKSDPWDL  60
PGDCDSERYF FSTREAKYPN GNRSNRSTGS GYWKATGIDK QIGKKKIVVG IKKTLVFYKG  120
KPPKGTRTNW VLHEYRLVDS QQESSYGQNM NWVLCRVFLK KRSNSNNKRK KDERDELENE  180
KETDRESEEE EKKSSCPIFY DFMRKDKKTR RRRSCDLNLT PATSCCCCFC SSSGSSSSVC  240
SSALTQTSSN DNNHEEISCR KNEFCLFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-551316315168NO APICAL MERISTEM PROTEIN
1ut4_B5e-551316315168NO APICAL MERISTEM PROTEIN
1ut7_A5e-551316315168NO APICAL MERISTEM PROTEIN
1ut7_B5e-551316315168NO APICAL MERISTEM PROTEIN
3swm_A5e-551316318171NAC domain-containing protein 19
3swm_B5e-551316318171NAC domain-containing protein 19
3swm_C5e-551316318171NAC domain-containing protein 19
3swm_D5e-551316318171NAC domain-containing protein 19
3swp_A5e-551316318171NAC domain-containing protein 19
3swp_B5e-551316318171NAC domain-containing protein 19
3swp_C5e-551316318171NAC domain-containing protein 19
3swp_D5e-551316318171NAC domain-containing protein 19
4dul_A5e-551316315168NAC domain-containing protein 19
4dul_B5e-551316315168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0753.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3250800.0AF325080.1 Arabidopsis thaliana putative NAM (no apical meristem)-like protein (At2g33480) mRNA, complete cds.
GenBankAF4102990.0AF410299.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds.
GenBankAY0937300.0AY093730.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469465.11e-147PREDICTED: NAC domain-containing protein 41-like
SwissprotO227981e-131NAC41_ARATH; NAC domain-containing protein 41
TrEMBLR0HQU61e-129R0HQU6_9BRAS; Uncharacterized protein
STRINGBostr.23794s0753.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-109NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]