PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23997s0006.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 387aa    MW: 43428.1 Da    PI: 6.5613
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23997s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.7e-083253582154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           k +yp++e++++L +++gL+ +q+ +WF N+R +
  Bostr.23997s0006.1.p 325 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 358
                           469*****************************87 PP
2ELK292.5e-10279300122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELKh+L+++Y+++++++++E++
  Bostr.23997s0006.1.p 279 ELKHELKQGYKEKIVDIREEIL 300
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-19114158IPR005540KNOX1
PfamPF037901.2E-17117157IPR005540KNOX1
SMARTSM012564.3E-28170225IPR005541KNOX2
PfamPF037911.7E-20175224IPR005541KNOX2
PROSITE profilePS512139.969279299IPR005539ELK domain
PfamPF037898.8E-7279300IPR005539ELK domain
SMARTSM011886.1E-4279300IPR005539ELK domain
PROSITE profilePS5007111.726299362IPR001356Homeobox domain
SMARTSM003892.4E-11301366IPR001356Homeobox domain
SuperFamilySSF466895.13E-16301365IPR009057Homeodomain-like
CDDcd000863.53E-11302363No hitNo description
Gene3DG3DSA:1.10.10.602.2E-25306363IPR009057Homeodomain-like
PfamPF059201.0E-17319358IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAFHNNHFNH FTDQQQHQPP PPPQQQQQQH FHESAPPNWL LRSDNNFLNL QTAASAAATS  60
SDSPSSAAAN QWLSRSSSFL QRGGTANNNA TGSGDVVEDV TGGEKKEAER WQNAKHKAEI  120
LSHPLYEQLL SAHVACLRIA TPVDQLPRID AQLAQSQNVV AKYSTLDTAQ GLLAGDDKEL  180
DHFMTHYVLL LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSFTGVSPGE GTGATMSEDE  240
DEQVESDAHL FDGSLDGLGF GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL  300
RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW  360
HSNPSSSTVS KNKRRSNAGE NSGRER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12302366872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23997s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX923930.0X92393.1 A.thaliana mRNA for KNAT4 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287910.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLR0HAZ40.0R0HAZ4_9BRAS; Uncharacterized protein
STRINGBostr.23997s0006.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]