PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.24145s0001.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 215aa MW: 24870.3 Da PI: 7.673

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.24145s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123	1.5e-38	13	113	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 aCa+Ck++r+kC+k+C lapyfp+++pk+f n+hklFG+sn++k++k ++e++r++am+ l+y+A+ara dPv G ++++ +l++++e+ Bostr.24145s0001.1.p 13 ACASCKYQRKKCTKNCLLAPYFPQDRPKQFLNAHKLFGVSNITKMIKGVEESQRDIAMQNLTYHANARALDPVGGLYRIMCDLKRKIEC 101 7************************************************************************************** PP DUF260 90 lkaelallkeel 101 +ael+l+++++ Bostr.24145s0001.1.p 102 CHAELNLIHQQI 113 ******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.038	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-35	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSLNTPSGGS TTACASCKYQ RKKCTKNCLL APYFPQDRPK QFLNAHKLFG VSNITKMIKG 60 VEESQRDIAM QNLTYHANAR ALDPVGGLYR IMCDLKRKIE CCHAELNLIH QQIAMCRSLA 120 QQEQRQRQRQ DLPFGCYSYG DLLEQEKEYV NVDGYDYQNM QQHQEMQQQE SPINYEMFLK 180 MPEQTSEVKL EERKISDQEQ NNLLRQILMS SSIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-25	4	113	4	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-25	4	113	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.24145s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010416074.1	1e-128	PREDICTED: LOB domain-containing protein 7-like
Swissprot	Q9SSM9	7e-99	LBD7_ARATH; LOB domain-containing protein 7
TrEMBL	A0A087HHY6	1e-104	A0A087HHY6_ARAAL; Uncharacterized protein
STRING	Bostr.24145s0001.1.p	1e-159	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15466	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	2e-95	LOB domain-containing protein 7

Link Out ? help Back to Top
Phytozome	Bostr.24145s0001.1.p