PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.24399s0035.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 147aa    MW: 16803.2 Da    PI: 9.4337
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.24399s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61.1e-3191145155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+rlrW+++LH++Fv+ave+LGG++kAtPk+++e+m+v+g++l+hvkSHLQk+Rl
  Bostr.24399s0035.1.p  91 KARLRWSSDLHDCFVNAVEKLGGPNKATPKSVKEMMEVEGIALHHVKSHLQKFRL 145
                           68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-2788145IPR009057Homeodomain-like
SuperFamilySSF466893.05E-1490145IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-2791146IPR006447Myb domain, plants
PfamPF002495.3E-693143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MKKKEKGKEV VTFEENPSTS VHHLDHFHHK EKVSMLLSEQ EIEVVLQSNK ETYKENLEKS  60
KKDNTEKAGI EKGKSSSSKI TPCIFYTSDE KARLRWSSDL HDCFVNAVEK LGGPNKATPK  120
SVKEMMEVEG IALHHVKSHL QKFRLGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1991147258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1991147258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-1991147157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1991147157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1991147157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1991147157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1991147258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1991147258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1991147258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1991147258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1991147258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1991147258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.24399s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886266.15e-90transcription repressor KAN1
TrEMBLD7L9C82e-88D7L9C8_ARALL; Uncharacterized protein
STRINGBostr.24399s0035.1.p1e-103(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134061520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.11e-75G2-like family protein