PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.24513s0102.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 461aa    MW: 51629.9 Da    PI: 5.3292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.24513s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-11255296854
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            Er RR + +++f+ L+el+P++     +K + a+i+ +A++YIk+L
  Bostr.24513s0102.1.p 255 TERERRVHFKDRFFHLKELIPNP-----TKIDRASIVGEAIDYIKEL 296
                           6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.46E-13240308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-10245301No hitNo description
Gene3DG3DSA:4.10.280.101.6E-10245304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.278247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-8253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8255296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEEERGSLYE EMGCFDPNTP AEVTVESSFS QAEPPPQPPQ ILVAGSTSNS NCSVDVEELS  60
EFHLSPQDCP QASSTPLQFH INPPPPPPPP PCDQFHNNLI HQMATHQQHS DWDNGYQDFV  120
NMGPNSATTP DLLSLLHLPR CSLPPPHHPS SMLPNSSISF SDIMSSSSAA AVMYDPLFHL  180
NFPMQPRDQN QLRNGSCLLG VEDQIQMDAN GGVNMMYFEG GNNNNSGGFD NGVLEFNPGV  240
TRKGRGSRKS RTFPTERERR VHFKDRFFHL KELIPNPTKI DRASIVGEAI DYIKELLRTI  300
EEFKILVEKK RIGRFRSKKK ARAGEGGEDQ EEEEDTVNYK PQSEVDQSCF NKNNNNSLRC  360
SWLKRKSKVT EVDVRIIDDE VTIKLVQKKK INCLLFTTKV LDQLQLDLHH VAGGQIGEHY  420
SFLFNTKICE GSCVYASGIA DTVMEVVEKQ YMEAVPSNGY *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.24513s0102.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2285920.0AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057110.0BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086080.0BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640475.10.0transcription factor bHLH10
RefseqXP_023640476.10.0transcription factor bHLH10
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLR0HNY70.0R0HNY7_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.24513s0102.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]