PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.24513s0104.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 437aa    MW: 49235.6 Da    PI: 5.1955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.24513s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-10225269554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               Er RR ++N+++  L+ l+P++      K + a+iL+  ++YI++L
  Bostr.24513s0104.1.p 225 PFTTERERRCHLNERYKALKLLIPSP-----SKGDRASILQDGIDYINEL 269
                           5678*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.0E-12218278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-11218274No hitNo description
SuperFamilySSF474592.09E-13219287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.999220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-8223269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MYEESSCFDP NLTVEAIVDN NGGFYELTTA GDTDFPVSHH FQPPLGSTTN SFNDDLKLPT  60
MDEFSVFPSV ISLPYSETQN QSISNNNNNH LIHQMIQESN WGVSADNSGF FMNTSDPNTR  120
STPIPDLLSL LHLPRCSISL PNSNLSDIMA GSCFAYDPLF HLNLPPQPPL IPGNDYSGFL  180
LGNDTNTTTQ RDESNVGNEN HIDSGIIEFS KEIRRKGRGK RKNKPFTTER ERRCHLNERY  240
KALKLLIPSP SKGDRASILQ DGIDYINELR RRVSELKYLV ERKRCGGRHK NNEADNDYNN  300
VDDHNNDNDD DDDENMDKKP ESDVTDQCSS NNSLRCSLLQ RKSKATEVDV RIVDDEVTIK  360
VVHKKKINCL LLVSKVLDQL QLDLHHVAGG QIGEHYSFFF NTKIYEGSTI YASAIANRVI  420
EVVDKHYMAS LPINSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.24513s0104.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198090.0AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBankAK1184410.0AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBankBT0096750.0BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294262.20.0transcription factor bHLH91
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLR0HPE80.0R0HPE8_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.24513s0104.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]