PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0049.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 102aa    MW: 11684.5 Da    PI: 10.0657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.86.8e-12996389
                          EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3  3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                          k+ t +d +++++l+lpk+ +e++       ++++++++ + d  ++s+ v+l  r++++ y++++GW +   a +Lk+gD++ ++ ++ +
  Bostr.25219s0049.1.p  9 KTVTENDLSTKNILILPKDKVENIirstgVPIPRNGIQVEILDN-NNSYWVNL--RQNQSVYYIGSGWGNLRAARNLKTGDVIKLYWQD-T 95
                          889999***************998**998555678888999995.566669**..999999***********************99533.4 PP

                          E CS
                    B3 89 e 89
                          +
  Bostr.25219s0049.1.p 96 K 96
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-15396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-11394IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-126101No hitNo description
PROSITE profilePS508639.0797101IPR003340B3 DNA binding domain
SMARTSM010191.8E-77101IPR003340B3 DNA binding domain
PfamPF023627.4E-9997IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MDPNMLIRKT VTENDLSTKN ILILPKDKVE NIIRSTGVPI PRNGIQVEIL DNNNSYWVNL  60
RQNQSVYYIG SGWGNLRAAR NLKTGDVIKL YWQDTKFIFT M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0049.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_849620.15e-52AP2/B3-like transcriptional factor family protein
SwissprotQ8GWU14e-53Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLD7KYM62e-47D7KYM6_ARALL; Uncharacterized protein
STRINGBostr.25219s0049.1.p1e-67(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.12e-55B3 family protein