PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0112.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 486aa    MW: 54127.9 Da    PI: 8.1845
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0112.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83.1e-10181222445
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                            k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Bostr.25219s0112.1.p 181 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 222
                           6889*************************8766666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-7178248IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289180224IPR004827Basic-leucine zipper domain
PfamPF001702.0E-7181222IPR004827Basic-leucine zipper domain
CDDcd147086.62E-23182234No hitNo description
SuperFamilySSF579596.19E-7182224No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-7183226No hitNo description
PROSITE patternPS000360185200IPR004827Basic-leucine zipper domain
PfamPF141442.0E-29263338IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MANHRISEAT NHNHNHHLPY SLIHGLNNNH PPPGFINQDG SSSFDFGELE EAIVLQGVKY  60
RNDEAKPPLV GGGGGATTLE MFPSWPIRTH QTLPTESSKS GGESSDSGSA NFSGKAESQQ  120
PESPMSSKQN HHLMLQHHHQ NNNMANSTST SGLPSTSRTL APPKPSEDKR KATTSGKQLD  180
AKTLRRLAQN REAARKSRLR KKAYVQQLES SRIKLSQLEQ ELQRARSQGL FMGGLPQGSP  240
NITSGAAIYD MEYGRWLEDD NRHMSEIRTG LQAHLSDNDL RLIVDGYIAH FDEIFRLKAV  300
AAKADVFHLI IGTWMSPAER CFIWMAGFRP SDLIKILVSQ MDLLTEQQLM GIYSLQHSSQ  360
QAEEALSQGL EQLQQSLIET LAASPVIDGM QQMAVALGKI SNLEGFIRQA DNLRQQTVHQ  420
LRRILTVRQA ARCFLVIGEY YGRLRALSSL WLSRPRETLM SDETSCQTTT DLQIVQSSRN  480
HFSNF*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0112.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3147570.0AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBankHQ1327430.0HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001030999.10.0bZIP transcription factor family protein
RefseqNP_001321503.10.0bZIP transcription factor family protein
RefseqNP_563810.20.0bZIP transcription factor family protein
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A1J3D5K80.0A0A1J3D5K8_NOCCA; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRINGBostr.25219s0112.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]