PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0208.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 707aa    MW: 80640.7 Da    PI: 5.3158
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0208.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.11.2e-1053277032373
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsP 89 
                           ++lL+ cA+ vs+gd+  a++lL ++++++sp gd+ qRla++f++AL+arl +s+ ++ ++   + ++++++ ++ l+++k+f  +sP
  Bostr.25219s0208.1.p 327 RTLLTLCAQSVSAGDKITADELLRQIRKQSSPLGDASQRLAHFFANALEARLEGSTGTMIQSYyDSITSKKRTAAQILQSYKVFLSASP 415
                           6799**************************************************77777776636777777779*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           ++++ ++  N++Il+a++ ++ +HiiDf+i +G+QWp ++q L++ + g  +lRiTg++ p++g   +e+++ tg+rL+++++++g+pf
  Bostr.25219s0208.1.p 416 FMTLIYFFSNKMILDAAKDATVLHIIDFGILYGFQWPMFIQHLSKSKTGLRKLRITGIELPQHGfrPTERIQDTGRRLTEYCKRFGIPF 504
                           ***************************************************************9************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                           e+n++++k++e++++ee++++p+E+laVn +l+ ++l + +   e+ +rd++Lkl+++++P+v+  +  + + n++ F +rf eal +y
  Bostr.25219s0208.1.p 505 EYNTIASKNWETIRIEEFNIRPNEVLAVNTSLRFKNLREVTPGEEDcPRDRFLKLIRNMNPNVFLSSTINGSFNAPFFTTRFKEALFHY 593
                           *****99******************************99988888889***************************************** PP

                  GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                           salfd + a+l+re+ eri  E e+ gre++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ +  ++k +  + + ++
  Bostr.25219s0208.1.p 594 SALFDLFGATLSRENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVESFREKMKKWGyHKDFVLD 682
                           *******************************************************************************999999**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                           e+s+++++gWk+r L+s S+W
  Bostr.25219s0208.1.p 683 EDSNWFLQGWKGRILFSSSCW 703
                           ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.496300683IPR005202Transcription factor GRAS
PfamPF035144.0E-103327703IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MMGSNYSGVV NGFEYYDVSF LPNQIPDLGF GVPSSSDFDL RMDQYHQPSI WVPASQDQDH  60
HQYSLPADEI DSENTLLKYV NQLLMEESIA EKQSMYYDSL ALRQTEEMLQ QVINDSQTQS  120
YLPDSITTSS SNTSGDYWSS SNSNSSVSIE TAANSTETQV LYDNHLGVSG VVSFPGSNML  180
QVGQPANEIL VRSIFSDADS VMQFKRGLEE ASKFLPNTDQ WIFNLEPEKE RVVPVKEEKD  240
WSGISKTRKS HHAREEEEDD LEETRSSKQY AVNVEDGKLT EMFDKVLLLD GECDPQIKED  300
GENGLSKVQA KKGGGRAKKK SQAVDFRTLL TLCAQSVSAG DKITADELLR QIRKQSSPLG  360
DASQRLAHFF ANALEARLEG STGTMIQSYY DSITSKKRTA AQILQSYKVF LSASPFMTLI  420
YFFSNKMILD AAKDATVLHI IDFGILYGFQ WPMFIQHLSK SKTGLRKLRI TGIELPQHGF  480
RPTERIQDTG RRLTEYCKRF GIPFEYNTIA SKNWETIRIE EFNIRPNEVL AVNTSLRFKN  540
LREVTPGEED CPRDRFLKLI RNMNPNVFLS STINGSFNAP FFTTRFKEAL FHYSALFDLF  600
GATLSRENPE RIHFEGEFYG REVMNVIACE GVDRVERPET YKQWQVRMIR AGFKQKPVEA  660
ELVESFREKM KKWGYHKDFV LDEDSNWFLQ GWKGRILFSS SCWVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-4533370311374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0208.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305860.20.0scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLR0INN70.0R0INN7_9BRAS; Uncharacterized protein
STRINGBostr.25219s0208.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein