PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0385.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 361aa    MW: 38542.9 Da    PI: 8.1344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0385.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10293338655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Bostr.25219s0385.1.p 293 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 338
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-14290349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.56E-11291342No hitNo description
Gene3DG3DSA:4.10.280.105.3E-13292350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-12293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSLPGG GGLLRYGSAP GSFLNSVVDE VIGGGGSNAR AFTGYQPSSD  60
NFIGNFFTGA DSSSSLRSDS TTCGVNSSSD GQKQPGNNNK DLFLDRSYGG FNHEISQHKS  120
SNELGGGSGN SSGSYSLARQ RSSPADFFSY LAADKNNFSL NKPTSDYNPQ GGSNAGRGHS  180
RLKSQLSFTG HDSLARINEV NETPVHDGSG HSFSAGSFGA AATDSWDDGS GSIGFTVTRP  240
NKRSKDMDSG LFSQYSLPSD SSMNYMDNFM QLPEDSVPCK IRAKRGCATH PRSIAERERR  300
TRISGKLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQHQ LQNLKKDQEN CTCGCSERQS  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0385.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0861060.0AY086106.1 Arabidopsis thaliana clone 21406 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_563749.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A178W6Y00.0A0A178W6Y0_ARATH; Uncharacterized protein
STRINGBostr.25219s0385.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]