PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25375s0045.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 368aa    MW: 41211.5 Da    PI: 10.1063
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25375s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.8e-223982750
                          HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          s + ++f++Rr++++KKA ELSvLC++ev+vi ++s g+l++++
  Bostr.25375s0045.1.p 39 SSKATSFIRRRKTVFKKALELSVLCGIEVCVICYGSGGELKTWP 82
                          6789***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-81484IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.8673985IPR002100Transcription factor, MADS-box
CDDcd002667.60E-1939101No hitNo description
SuperFamilySSF554553.14E-1739105IPR002100Transcription factor, MADS-box
PfamPF003193.3E-143981IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVSSSSCSPS SSSSTKKKTT NSSQIQQTLS KKPNSASFSS KATSFIRRRK TVFKKALELS  60
VLCGIEVCVI CYGSGGELKT WPEDREKVKG MARRYGALSE TKRRKGSKKK KKVRRVFKVK  120
YPVLDPRFDN YSVEQLTGMI QSLERNLTRI QHRIHAVVGG QGQKKIQYRN MGNQELMMTT  180
TMNHLQQQSN QVSMFLFDHG NGNISQIPVS AYASALNQGQ SLPPIPPELM IYPNSDVGNY  240
SGSLGVQGTG INGFQNMNML TCNNINNVND FSKQIDQNSN EFENTNMYIR NNFNVEDYSV  300
LLGVQGTVIN ELQSMNMHDY NNNSVNANVL SHQLVQFPTQ QQHRAFNSDQ SGNNNIWSLY  360
DLSQSIL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25375s0045.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188495.11e-162AGAMOUS-like 103
SwissprotQ9LSB21e-163AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A178V6E81e-158A0A178V6E8_ARATH; AGL103
STRINGBostr.25375s0045.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-141AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]