PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25463s0212.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 310aa    MW: 33941 Da    PI: 4.6331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25463s0212.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.5e-20100149255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +g+W+AeIrdps    r  r++lg+++taeeAa  +++a+ +l+g
  Bostr.25463s0212.1.p 100 KFRGVRQRP-WGKWAAEIRDPS----RrVRVWLGTYDTAEEAAIVYDNAAIQLRG 149
                           89*******.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-3099157IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21100157IPR016177DNA-binding domain
SMARTSM003801.1E-37100163IPR001471AP2/ERF domain
PROSITE profilePS5103223.406100157IPR001471AP2/ERF domain
PfamPF008476.5E-13100149IPR001471AP2/ERF domain
CDDcd000184.53E-32100156No hitNo description
PRINTSPR003672.7E-10101112IPR001471AP2/ERF domain
PRINTSPR003672.7E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
METEKKISLP KKQKIKNIVT TTITQPRILR ISVTDPYATD SSSDEDEQDF EEISKTRRRV  60
KKYVNEVVLQ SVSDKDKPMT KKRKKTVATA PVVVTTAARK FRGVRQRPWG KWAAEIRDPS  120
RRVRVWLGTY DTAEEAAIVY DNAAIQLRGP HALLNFSPPS PPPVTENGEE ALTVMEETSD  180
FISGGGECLA SPVSVLQSSF SGESTAVKEV FSSVSAKVEM KEEPLSTVSD TFTDFLAPLF  240
SDDDVFGFPT SMTDCYGGDL FGEDLFADMS FGFGFGSGSG SGTGFSSWHV EDHFQDIGDL  300
FGSDPLLTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2299156159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18084KKRKK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25463s0212.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435385.11e-138PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotO825031e-120CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A3P6AUH41e-129A0A3P6AUH4_BRAOL; Uncharacterized protein
STRINGBostr.25463s0212.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-108cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]