PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25463s0359.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 255aa    MW: 28682.7 Da    PI: 5.3305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25463s0359.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.21.4e-2299159259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++W+KYGqK++k s++ r YYrC++a   +C+++k+v++s+e+p+v  +tY g+H +e
  Bostr.25463s0359.1.p  99 NDGFSWKKYGQKTIKTSPYQRCYYRCAYAksqNCNATKRVQKSQENPSVYRTTYVGQHICE 159
                           7**************************998889*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.55193161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-2495160IPR003657WRKY domain
SuperFamilySSF1182907.06E-2396160IPR003657WRKY domain
SMARTSM007742.2E-3198160IPR003657WRKY domain
PfamPF031069.5E-2399158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDPGVDKAVE ALLRGQKYGN HLKMQLENHE TCSVQTEALV STVLDSFSIG LSYITSITSS  60
DHSPHHESSS QNTAPKSLKK KSSKGLEHYR DDSPTPLRND GFSWKKYGQK TIKTSPYQRC  120
YYRCAYAKSQ NCNATKRVQK SQENPSVYRT TYVGQHICEV SAFSQPNDDV TYGSKMIQFE  180
KFDQAIVDSV LPQHVPVDNQ ETIIDDVVDQ EGDETNKLLD GDDQFWANEF PPLSPGQMMF  240
FDNIAASEYN PFQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1399159969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25463s0359.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405092.11e-104probable WRKY transcription factor 64
SwissprotQ9C5571e-81WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLV4L8491e-103V4L849_EUTSA; Uncharacterized protein
STRINGBostr.25463s0359.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.14e-77WRKY DNA-binding protein 64