PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25463s0411.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 422aa    MW: 49218.6 Da    PI: 4.5636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25463s0411.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.43.6e-2941332128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksg 81 
                           p+G rF+P+d  lv  yL++ ve+k+ ++   i+++d+y+ ePw Lp+ v++   ++kewy+F++r+k    gk ++r+       + g
  Bostr.25463s0411.1.p   4 PVGTRFDPKDLGLVRLYLRNMVERKQSSF---ITTMDVYQDEPWLLPH-VSNplfKNKEWYYFVPRNKLR--GKIPRRTvpgrggSEGG 86 
                           89***********************9666...9**************4.233355889*******99865..5555564345555789* PP

                   NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           yWk+t  +k++l+ +++++g k+ L++++  + +g ktdW+m ey+l
  Bostr.25463s0411.1.p  87 YWKSTDGKKDILDGHNRVMGYKQCLTYHTRVHGEGMKTDWLMTEYSL 133
                           *********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-372150IPR003441NAC domain
PROSITE profilePS5100537.1873151IPR003441NAC domain
PfamPF023655.3E-174133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MRFPVGTRFD PKDLGLVRLY LRNMVERKQS SFITTMDVYQ DEPWLLPHVS NPLFKNKEWY  60
YFVPRNKLRG KIPRRTVPGR GGSEGGYWKS TDGKKDILDG HNRVMGYKQC LTYHTRVHGE  120
GMKTDWLMTE YSLHKGDDEF QDLVLCRIRD KTKTKVNKFE YVRQTQPQPQ PQVAENTDRD  180
VTEQQQEEVG LTGFDDELET MMLEGQEDRD VTEQQQEEEI QIIPLAQIHE NNNNVMMLNQ  240
QVQEKAGLAG FANELDMLKL MLEGEQDRVI QLQQQQLYEE ILIFPPMQSG DNNNNNNNKN  300
NNEVMIMSIQ LVDHLIGLGD KLKMMMLGGQ EERDVTQHKQ KQLEEEIPIP PPMQNNDNTN  360
NDDVMMMWNQ EQFQLLQPIP QAQDPSQLVG QDDTMVLMNN PINALELENY EFIDLTRKQR  420
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-19115118168NAC domain-containing protein 19
3swm_B3e-19115118168NAC domain-containing protein 19
3swm_C3e-19115118168NAC domain-containing protein 19
3swm_D3e-19115118168NAC domain-containing protein 19
3swp_A3e-19115118168NAC domain-containing protein 19
3swp_B3e-19115118168NAC domain-containing protein 19
3swp_C3e-19115118168NAC domain-containing protein 19
3swp_D3e-19115118168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25463s0411.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645676.11e-156NAC domain-containing protein 6
TrEMBLR0I9X61e-173R0I9X6_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.25463s0411.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.11e-57NAC domain containing protein 6