PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25494s0029.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 627aa    MW: 66155.9 Da    PI: 9.12
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25494s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.5e-09197241144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                           r++W++eEde l  avk+ G g+W+ I +       Rt+ q+  rw
  Bostr.25494s0029.1.p 197 RKKWSAEEDEELFAAVKRCGEGNWAHIVKgdFR-GERTASQLSQRW 241
                           789***********************9652134.478888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.601192248IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-12194246IPR009057Homeodomain-like
SuperFamilySSF466897.9E-12194247IPR009057Homeodomain-like
SMARTSM007172.4E-9196247IPR001005SANT/Myb domain
PfamPF002491.7E-6197241IPR001005SANT/Myb domain
CDDcd116602.69E-14198246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MVDSSSNSRR RIITEGDTAT LLQRYDVKTI LRMLQEMAHY SEIKMDWNEL VKKTTTGITN  60
AREYQLLWRH LSYREPLLPV EDDAQPLDDD SDMECELEAS PAVSHEAYVE AIAHVKVMAA  120
SFVPSESDIL DDSTVEAPLT INIPYVLPEG TQEPSESPWS SRGMNITFPV CLQKATSTEG  180
MNGNGSASSS MAFRRKRKKW SAEEDEELFA AVKRCGEGNW AHIVKGDFRG ERTASQLSQR  240
WALIRKRCDT STSVNQSGLQ RTEAQIAVNH ALSLALGNRP PTKKLSVGIS TTTSSCGIIE  300
TQANGASSSQ GHQQSKPVVQ VLPRAATSVP ASKSRVVRKT TASSISRLDL MVTANSVAVA  360
ACMGGVSTAA SVPKVEPGKT DAPLVPKAEP VKNASTACMP RPSGSLSMPK VEPGTSVTAS  420
SIVKAVGPAN TLPLANEKLK PVTAISSSNK LLLMAPCSEG STMLSASAPL ASESRTVSNQ  480
RVFAASFPAT VLQPKPTAET GTCKPDGGQK EQARGNGASS SAAIQPNQMT STNSEISRGK  540
QATQAQSPNL LPRKIPVVQT AGHGATNQKL VDKPSDKTVI PSISGAGSQS KAKCEVNNKV  600
GPAIKVSSVC GKPPEVATVA GTGQGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25494s0029.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195460.0AY519546.1 Arabidopsis thaliana MYB transcription factor (At1g09710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868169.10.0uncharacterized protein LOC9328581 isoform X1
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGBostr.25494s0029.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein