PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25542s0071.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family BBR-BPC
Protein Properties Length: 296aa    MW: 32915.2 Da    PI: 9.6099
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25542s0071.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind313.19.1e-9612951301
             GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaer 70 
                           m++ g++e  r k+ yy+                ++++l   +++++ms++aerda+++ern a+++kk+a+a+rd+a+ qrdkal+er
  Bostr.25542s0071.2.p   1 MESGGQYEngRCKSdYYKgtqsvwnmmpqhqmkeQHNALV--MNKKIMSILAERDAAVKERNEAVAAKKEALAARDEALEQRDKALSER 87 
                           7888888878999889999999999997766644445555..99********************************************* PP

             GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkp 159
                           ++a++er+++l al+++en+l+  l       s +k               ++  ++e++     p+++ ++ea +++ +k   r+k+ 
  Bostr.25542s0071.2.p  88 DNAIMERESALNALQYRENNLNYIL-------SCAKRGG-----------SQSCVTEESHLPAPSPVSTIPPEAANTRPTK---RKKES 155
                           *******************965443.......2222221...........1122234566667889999999999999888...45555 PP

             GAGA_bind 160 kekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                           k+  ++k kk +e+ + +v+++++  +s+++++s d++ln v++De+t+PvP C+CtG+ rqCYkWG GGWqS+CCttt+S+yPLP+++
  Bostr.25542s0071.2.p 156 KQGARSKGKKVGEDLNCQVASPGM--KSRKDWDSNDVGLNLVTFDETTMPVPRCTCTGTARQCYKWGHGGWQSSCCTTTLSQYPLPQMP 242
                           666666777778899999999995..6************************************************************** PP

             GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           ++r++Ri+grKmS+++f++lL++La+eG+dls pvDLkd+WAkHGtn+++ti+
  Bostr.25542s0071.2.p 243 NKRHSRIGGRKMSGSVFSRLLSRLAGEGHDLSSPVDLKDYWAKHGTNRYITIK 295
                           ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.9E-1621295IPR010409GAGA-binding transcriptional activator
PfamPF062176.9E-9318295IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MESGGQYENG RCKSDYYKGT QSVWNMMPQH QMKEQHNALV MNKKIMSILA ERDAAVKERN  60
EAVAAKKEAL AARDEALEQR DKALSERDNA IMERESALNA LQYRENNLNY ILSCAKRGGS  120
QSCVTEESHL PAPSPVSTIP PEAANTRPTK RKKESKQGAR SKGKKVGEDL NCQVASPGMK  180
SRKDWDSNDV GLNLVTFDET TMPVPRCTCT GTARQCYKWG HGGWQSSCCT TTLSQYPLPQ  240
MPNKRHSRIG GRKMSGSVFS RLLSRLAGEG HDLSSPVDLK DYWAKHGTNR YITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25542s0071.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6336030.0EF633603.1 Cardamine pratensis GAGA-motif binding transcriptional activator (BBR/BPC5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411681.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005542.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005543.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005544.10.0protein BASIC PENTACYSTEINE5
SwissprotF4JUI30.0BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLV4M9X70.0V4M9X7_EUTSA; Uncharacterized protein
STRINGBostr.25542s0071.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-176basic pentacysteine 5