PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25542s0071.3.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family BBR-BPC
Protein Properties Length: 285aa    MW: 31548.9 Da    PI: 10.0132
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25542s0071.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind310.46.2e-952328415301
             GAGA_bind  15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvls 103
                           e++++l   +++++ms++aerda+++ern a+++kk+a+a+rd+a+ qrdkal+er++a++er+++l al+++en+l+  l       s
  Bostr.25542s0071.3.p  23 EQHNALV--MNKKIMSILAERDAAVKERNEAVAAKKEALAARDEALEQRDKALSERDNAIMERESALNALQYRENNLNYIL-------S 102
                           3556666..99****************************************************************965443.......2 PP

             GAGA_bind 104 gtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekk 192
                            +k               ++  ++e++     p+++ ++ea +++ +k   r+k+ k+  ++k kk +e+ + +v+++++  +s+++++
  Bostr.25542s0071.3.p 103 CAKRGG-----------SQSCVTEESHLPAPSPVSTIPPEAANTRPTK---RKKESKQGARSKGKKVGEDLNCQVASPGM--KSRKDWD 175
                           222221...........1122234566667889999999999999888...45555666666777778899999999995..6****** PP

             GAGA_bind 193 sidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
                           s d++ln v++De+t+PvP C+CtG+ rqCYkWG GGWqS+CCttt+S+yPLP+++++r++Ri+grKmS+++f++lL++La+eG+dls 
  Bostr.25542s0071.3.p 176 SNDVGLNLVTFDETTMPVPRCTCTGTARQCYKWGHGGWQSSCCTTTLSQYPLPQMPNKRHSRIGGRKMSGSVFSRLLSRLAGEGHDLSS 264
                           ***************************************************************************************** PP

             GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
                           pvDLkd+WAkHGtn+++ti+
  Bostr.25542s0071.3.p 265 PVDLKDYWAKHGTNRYITIK 284
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1493284IPR010409GAGA-binding transcriptional activator
PfamPF062174.2E-9311284IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKMGGASPIT TKWNMMPQHQ MKEQHNALVM NKKIMSILAE RDAAVKERNE AVAAKKEALA  60
ARDEALEQRD KALSERDNAI MERESALNAL QYRENNLNYI LSCAKRGGSQ SCVTEESHLP  120
APSPVSTIPP EAANTRPTKR KKESKQGARS KGKKVGEDLN CQVASPGMKS RKDWDSNDVG  180
LNLVTFDETT MPVPRCTCTG TARQCYKWGH GGWQSSCCTT TLSQYPLPQM PNKRHSRIGG  240
RKMSGSVFSR LLSRLAGEGH DLSSPVDLKD YWAKHGTNRY ITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25542s0071.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6336030.0EF633603.1 Cardamine pratensis GAGA-motif binding transcriptional activator (BBR/BPC5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411681.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005542.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005543.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005544.10.0protein BASIC PENTACYSTEINE5
SwissprotF4JUI31e-172BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLV4M9X70.0V4M9X7_EUTSA; Uncharacterized protein
STRINGBostr.25542s0071.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-161basic pentacysteine 5