PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25542s0130.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 301aa    MW: 33987.2 Da    PI: 7.5737
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25542s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.6e-32220278159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  Bostr.25542s0130.1.p 220 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHS 278
                           59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-33205278IPR003657WRKY domain
SuperFamilySSF1182904.45E-28213279IPR003657WRKY domain
PROSITE profilePS5081129.23215280IPR003657WRKY domain
SMARTSM007749.9E-37220279IPR003657WRKY domain
PfamPF031064.0E-25221277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGTINQGVSF FDESQTIINP NNTNHLGFFF SFPNHTLSSP SSTSSSSPSS LVSPFLGHHS  60
LNSFLHNNPS SFVTHPQDSI NLVANLPQNL ISSLSSSKQR DDHDGFLDLD HHRLTGGRSS  120
QRPSPNPWAW SSQAGYGCSQ KNNHGSEIDI DDNDDEIGDG GGINDDDNDH HHNDTARRHD  180
KHNTASLGVV SSLKIKKLKT RRKVREPRFC FKTLSEVDVL DDGYRWRKYG QKVVKNTQHP  240
RSYYRCTQDK CRVKKRVERL ADDPRMVITT YEGRHLHSPN HLDDDCLSSS HHFPLSNFFW  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25212277974Probable WRKY transcription factor 4
2lex_A2e-25212277974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25542s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211530.0AF421153.1 Arabidopsis thaliana WRKY transcription factor 13 (WRKY13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431912.11e-170PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB71e-167WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A384L7281e-165A0A384L728_ARATH; WRKY13
TrEMBLC0SVM61e-165C0SVM6_ARATH; Uncharacterized protein At4g39410 (Fragment)
STRINGBostr.25542s0130.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-141WRKY DNA-binding protein 13