PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25542s0241.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 305aa    MW: 34656.6 Da    PI: 6.6742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25542s0241.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-151462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W++eEd  l+ +++++G+g +W t ++++g +R++k+c++rw++yl
  Bostr.25542s0241.1.p 14 KGPWSPEEDAVLKSYIEKHGTGnNWITLPQRIGIKRCGKSCRLRWLNYL 62
                          79*******************************55************97 PP
2Myb_DNA-binding36.61e-1169111246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g +T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Bostr.25542s0241.1.p  69 GGFTDEEDYIICSLYITIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                           569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.475966IPR017930Myb domain
SuperFamilySSF466899.19E-2712109IPR009057Homeodomain-like
SMARTSM007173.5E-121364IPR001005SANT/Myb domain
PfamPF002493.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-241569IPR009057Homeodomain-like
CDDcd001676.31E-91662No hitNo description
SMARTSM007171.2E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129415.22167117IPR017930Myb domain
PfamPF002494.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2370117IPR009057Homeodomain-like
CDDcd001673.88E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRAPCCDKM AVKKGPWSPE EDAVLKSYIE KHGTGNNWIT LPQRIGIKRC GKSCRLRWLN  60
YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR TDNDIKNYWN TRLKKKLLSK  120
QGKAFHQHLN VKFERGTTSS SSSQYQIPMF HDENNKSNQT LYDQVVDPSI TSFAMEEQSM  180
IMKNPILESF SWETNKVFFD IDHDGAASSY HHHSSPSLTS MSSSSTGTNS SLHMSHYSVN  240
QNDHGDQQDM FFLTGFENLH TELFNEIANN NTRAIGLHGA EMLNNNGLDH DISSFIDYPL  300
YDNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25542s0241.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196140.0AY519614.1 Arabidopsis thaliana MYB transcription factor (At4g37780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195492.21e-179myb domain protein 87
SwissprotF4JSU01e-180MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A178V4J21e-179A0A178V4J2_ARATH; MYB87
STRINGBostr.25542s0241.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-167myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]