PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25570s0011.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 293aa    MW: 33065.6 Da    PI: 6.2532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25570s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.4e-12189214126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           y   +C+++ +tG+C yGd+CkF H+
  Bostr.25570s0011.1.p 189 YQPDICKDYKETGYCGYGDSCKFLHD 214
                           67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.26E-9187220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009188216IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8188215IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-10189214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-13189219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.4E-9260291IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578507.32E-10264290No hitNo description
CDDcd001623.85E-6265291No hitNo description
PfamPF000978.3E-5265291IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS500898.535265288IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVSEPQPAGQ ESQSQHVCTF FKKPTKAKNI RKRTIDADEE DEDSKIESSI LQNQKKVAKP  60
DSKLYFSSGP SKSSTTTNEA PEKPVFHYDS SKEIQVQNDS RATATLETET DFNQDARAIR  120
ERVLKKADEA LKGNKKKASD EKLYTGIHGY TDHKAGFRRE QTISSEKAGG SHGPLRASAH  180
IRVSARFDYQ PDICKDYKET GYCGYGDSCK FLHDRGDYKP GWQIEKEWEE AEKVRKRNKA  240
MGVEDEDDEA GNDSDEDNDA LPFACFICRE PFVDPVVTKC KHYFCEHCAL KV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-5499291113288RING finger protein 113A
5z58_M6e-5499291113288RING finger protein 113A
6ff4_t6e-5499291113288RING finger protein 113A
6ff7_t6e-5499291113288RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25570s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305264.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_023645143.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGBostr.25570s0011.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein