PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.2570s0201.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

GeBP

Protein Properties

Length: 452aa MW: 49405.9 Da PI: 4.6435

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.2570s0201.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	120.5	8.4e-38	135	233	2	98
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 lfqrlw++eDei lL+G++d+ ++++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++f Bostr.2570s0201.1.p 135 LFQRLWTDEDEIELLRGFLDYmTTHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTF 224 79*****************888999999999***************************************************** PP DUF573 90 elskkiWgs 98 e+s+kiW++ Bostr.2570s0201.1.p 225 EISRKIWNQ 233 *****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.8E-34	136	232	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MTSDHRDAVF SLESPDLEEG GVGDGGESDT DEDLRENDDV IMPETNEADP EDDDPEEEDL 60 NSPSTSSLAM VSTISTTAVV SGTPTTTSST GAVTVALPAG SAVPVSVIPV DSDPKWHRMT 120 EIVHQRPPID DSRRLFQRLW TDEDEIELLR GFLDYMTTHR GSSSHPPDTA PFYEQIKSKL 180 QLDFNKNQLV EKLRRLKKKY RNVMSKISSG KEVFFKSPHD QSTFEISRKI WNQTGKIIGF 240 EDNNVMDFEE TNNHHNTNGN YSTFNSPSSN PTLELDSENG VEKKLTMSSS SGSRKRSRSR 300 IGKIEEDNKP IIIPSDGQIP NAASNVNLNE TAAAVGIGGN LGGLIEETVK NCVSPVIKEM 360 MNGTTSMMMA AMGGGFPGSG GAAHGFGSLS PMFTRPLNFG FGVGGGNKAV ADERWRKQQI 420 LELEVYSRRL ELVQEQIRTT LNELKTMPSG V*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MTSDHRDAVF SLESPDLEEG GVGDGGESDT DEDLRENDDV IMPETNEADP EDDDPEEEDL  60
NSPSTSSLAM VSTISTTAVV SGTPTTTSST GAVTVALPAG SAVPVSVIPV DSDPKWHRMT  120
EIVHQRPPID DSRRLFQRLW TDEDEIELLR GFLDYMTTHR GSSSHPPDTA PFYEQIKSKL  180
QLDFNKNQLV EKLRRLKKKY RNVMSKISSG KEVFFKSPHD QSTFEISRKI WNQTGKIIGF  240
EDNNVMDFEE TNNHHNTNGN YSTFNSPSSN PTLELDSENG VEKKLTMSSS SGSRKRSRSR  300
IGKIEEDNKP IIIPSDGQIP NAASNVNLNE TAAAVGIGGN LGGLIEETVK NCVSPVIKEM  360
MNGTTSMMMA AMGGGFPGSG GAAHGFGSLS PMFTRPLNFG FGVGGGNKAV ADERWRKQQI  420
LELEVYSRRL ELVQEQIRTT LNELKTMPSG V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	299	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.2570s0201.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY070136	0.0	AY070136.1 Arabidopsis thaliana AT3g04930/T9J14_12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297660.1	0.0	probable transcription factor At3g04930
Swissprot	Q9CAV7	0.0	STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBL	R0I2K6	0.0	R0I2K6_9BRAS; Uncharacterized protein
STRING	Bostr.2570s0201.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.1	0.0	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bostr.2570s0201.1.p