PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0059.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SBP
Protein Properties Length: 933aa    MW: 103997 Da    PI: 5.4287
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0059.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.12.2e-42140217178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cqve+Ceadls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Bostr.25993s0059.2.p 140 VCQVENCEADLSKVKDYHRRHKVCEMHSKATSAMVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 217
                           6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-34134202IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.633138215IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-39139219IPR004333Transcription factor, SBP-box
PfamPF031105.8E-31141214IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.0E-7694822IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.82E-7723824IPR020683Ankyrin repeat-containing domain
CDDcd002047.75E-9725821No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 933 aa     Download sequence    Send to blast
MEGEAQHFYG FRAVDLRSVG KRSVEWDLND WKWDGDLFVA TQLNPGGSET TGRQFFPIGN  60
SSNSSSSCSD EGNNSDLMVR STREVEKKRR VVTIEGDNNG GDGGLTLKLG DNGCDLNGER  120
EGNYAAKKTK FGGGVTNRAV CQVENCEADL SKVKDYHRRH KVCEMHSKAT SAMVGGIMQR  180
FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTNPEPG ANGNPSDDQS SNYLLISLLK  240
ILSNMHTTRS DPTGDQDLMS HLLKSLVSHA GEQLGKNLVE LLLQGGSRGS LNLGNSGLLA  300
IEEAPQEDLK QLSVNVPEIP QQELYANGTA TENRSEKQVK MNDFDLNDIY IDSDNTDIER  360
SPPPTNPATS SLDYPSWIHQ SSPPQTSRNS DSASDQSPSS SSEDAQMRTG RIVFKLFGKE  420
PNDFPVVLRG QILDWLSHSP TDMESYIRPG CIVLTIYLRQ AETAWEELSD DLGFSLRKLL  480
DLSDDPLWTT GWIYVRVQNQ LAFVYNGQVV VDTSLPLKSR DYSHIISVKP LAVAATGKAQ  540
FTVKGINIRR RGTSLLCAVE GKYLIQETTH DSTTEENDDL KENNEIVECV NFSCDMPIIS  600
GRGFMEIEDQ GLSSSFFPFL VVEEDDVCSE IRILETTLEF TGTDSAKQAM DFIHEIGWLL  660
HRSKLGESDP NPDVFPLIRF QWLIEFSMDR EWCAVIRKLL NMFFDGAVGD FSSSSNATLS  720
ELCLLHRAVR KNSKPLVETL LRYVPKQQRN SLFRPDAAGP AGLTPLHIAA GKDGSEDVLD  780
ALTEDPAMVG IEAWKTSRDS TGFTPEDYAR LRGHFSYIHL IQRKINKKST TEDHVVVNIP  840
VSFSDREQKE PKSGSVTSVL EITQINQLPC KLCDHKLVYG TTRRSVAYRP AMLSMVAIAA  900
VCVCVALLFK SCPEVLYVFQ PFRWELLDYG TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-32134214484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0059.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159480.0KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639628.10.0squamosa promoter-binding-like protein 1
RefseqXP_023639629.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLD7LFY40.0D7LFY4_ARALL; Uncharacterized protein
STRINGBostr.25993s0059.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]