PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0080.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 325aa    MW: 36709.6 Da    PI: 6.1956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31023.5e-3247152199
                           EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ 
  Bostr.25993s0080.1.p  47 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRC 135
                           89****************************66677899*************************************************44 PP

                           .SS..SEE..EEEEE-S CS
                    B3  86 .gr..sefelvvkvfrk 99 
                            g+  ++ +l++ ++r+
  Bostr.25993s0080.1.p 136 vGDsgRNSRLFIDWRRR 152
                           34324555677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-4236154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-3044147IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-2545147No hitNo description
SMARTSM010192.7E-2347153IPR003340B3 DNA binding domain
PROSITE profilePS5086314.7947153IPR003340B3 DNA binding domain
PfamPF023622.7E-2947152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMTNLSLSRD GDEEEEEEEK KPLQEEEEEE EEAGARAREV AEREHMFDKV VTPSDVGKLN  60
RLVIPKQHAE RYFPLDSSSN EKGLLLNFED LTGKSWRFRY SYWNSSQSYV MTKGWSRFVK  120
DKKLDAGDIV SFQRCVGDSG RNSRLFIDWR RRPKVPEHPH FSAGAMFPRF YSFPSASYNL  180
YNHQQQRHYG QGGGYNYHQI PREFGYGYFV RSVDQRINNS EAVVADPLVI ESVPVMLNGR  240
ANQGRLVGTA EKRLRLFGVD MECGKSGMTN STDEESSSSG GSLPRGGGGA SSSSSLFQLR  300
LGSISEDDRF SKKGKSSLSF DLDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-79401551116B3 domain-containing transcription factor NGA1
5os9_B3e-79401551116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044110.0AC004411.3 Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence.
GenBankAC0053100.0AC005310.3 Arabidopsis thaliana chromosome 2 clone F19D11 map CIC06C03, complete sequence.
GenBankAK1180450.0AK118045.1 Arabidopsis thaliana At2g46870 mRNA for putative RAV-like B3 domain DNA binding protein, complete cds, clone: RAFL19-27-L04.
GenBankBT0085340.0BT008534.1 Arabidopsis thaliana clone U50690 putative RAV B3 domain DNA binding protein (At2g46870) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankFJ8737310.0FJ873731.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA1 (NGA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566089.10.0AP2/B3-like transcriptional factor family protein
SwissprotO827990.0NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A178VXJ80.0A0A178VXJ8_ARATH; NGA1
TrEMBLC3VMM20.0C3VMM2_ARATH; NGATHA1
STRINGBostr.25993s0080.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-147B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]