PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0085.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 359aa    MW: 41258.6 Da    PI: 7.1213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13177227154
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +r++h ++Er+RR+++N  ++ Lr+++P++   + ++ + a+i+  A++++k L
  Bostr.25993s0085.1.p 177 QRMTHIAVERNRRRQMNVHLNSLRSIIPPS---YIQRGDQASIVGGAIDFVKIL 227
                           79****************************...9***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.42E-9175232No hitNo description
SuperFamilySSF474595.89E-16176255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.729176227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12177241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9182233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MERSIQGQNK LCSLDQKVNV RRSLQVQGSV EDHQSLALEE EHFSTPSLLQ DTTIPFLQML  60
QQSEDPSPFL SIKDPNFLAL LSLQTLEKPW ELENYLPHEV PEFHSPIHSE TNHYYQNPYL  120
EGVNEAISSQ ELPFNRLENA NSRRKRKNNN LVTLMTIEKR KRRRTKPAKN IEEMESQRMT  180
HIAVERNRRR QMNVHLNSLR SIIPPSYIQR GDQASIVGGA IDFVKILEQH LQSLEAQKTT  240
QQSDSKEQIP EDNNLRDISS NKLRASKEEE EANKLKINAT VIESHVNLKI QCRRKQGQLL  300
RSIILLEKLR FTVLHLNITS PTDTSVSYSF NLKMEDDCNL GSADEITAAI RQIFSTAD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144163KRKNNNLVTLMTIEKRKRRR
2158163KRKRRR
3159163RKRRR
4159164RKRRRT
5159166RKRRRTKP
6177188RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0085.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6784340.0AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293490.10.0transcription factor bHLH70 isoform X2
SwissprotO810370.0BH070_ARATH; Transcription factor bHLH70
TrEMBLR0HQY40.0R0HQY4_9BRAS; Uncharacterized protein
STRINGBostr.25993s0085.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]