PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0138.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 292aa    MW: 32896.6 Da    PI: 4.7832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-1892142256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +y+GVr+++ +g+++AeIrdps+   r+r +lg+f taeeAa  +++a+ +l+g+
  Bostr.25993s0138.1.p  92 KYRGVRQRP-WGKFAAEIRDPST---RTRLWLGTFATAEEAAIGYDRAAIRLKGH 142
                           8********.**********976...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-2992148IPR001471AP2/ERF domain
PfamPF008473.0E-1192142IPR001471AP2/ERF domain
SMARTSM003803.1E-3592155IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2092149IPR016177DNA-binding domain
PROSITE profilePS5103221.69492149IPR001471AP2/ERF domain
CDDcd000187.43E-3292148No hitNo description
PRINTSPR003676.4E-1093104IPR001471AP2/ERF domain
PRINTSPR003676.4E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKSRERKVKY TVHRKITSLP FNGFPKTVKI IVTDPCATDS SSDEENDNKS VAPRVKRYVE  60
EIRFCDDDGA KPVRKSKNKA TENVGDLVKP VKYRGVRQRP WGKFAAEIRD PSTRTRLWLG  120
TFATAEEAAI GYDRAAIRLK GHNAQTNFLT PPTEVLPETP VIDLETVSGC DSARESQVSL  180
CSPTSVLRFN HNEETEYRTE PMKLSSSSAE SKEETLSSDP FFLPDLFRTV DCFWDSEITP  240
DPLFLDEVQN NNNNTVSDKD TNLSESFPLG VIGDFSSWDV DEFFQDHLLD N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2293148359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0138.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053971e-160AC005397.3 Arabidopsis thaliana chromosome 2 clone T3F17 map CIC02E07, complete sequence.
GenBankAK2276611e-160AK227661.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL14-24-M06.
GenBankAY0746381e-160AY074638.1 Arabidopsis thaliana At2g46310/T3F17.4 mRNA, complete cds.
GenBankBT0031211e-160BT003121.1 Arabidopsis thaliana At2g46310 mRNA, complete cds.
GenBankCP0026851e-160CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294723.11e-177ethylene-responsive transcription factor CRF5
SwissprotO823391e-163CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLR0FY071e-176R0FY07_9BRAS; Uncharacterized protein
STRINGBostr.25993s0138.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-143cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]