PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0157.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 78aa    MW: 9297.63 Da    PI: 9.6456
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0157.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.43.2e-19355359
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                           gy++rKYGqK+vk+s +pr    Ct++  +vkk+v r ++++++ve+tYeg Hnh+
  Bostr.25993s0157.1.p  3 HGYRYRKYGQKSVKNSLYPR----CTQHMYNVKKQVRRLSKETSIVETTYEGIHNHP 55
                          59**************9995....********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.663157IPR003657WRKY domain
SMARTSM007741.6E-15156IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-16355IPR003657WRKY domain
SuperFamilySSF1182906.28E-15356IPR003657WRKY domain
PfamPF031062.1E-12455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
YTHGYRYRKY GQKSVKNSLY PRCTQHMYNV KKQVRRLSKE TSIVETTYEG IHNHPCEELM  60
QTQTPLLHQM LFLSEFT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0157.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423918e-93AF442391.1 Arabidopsis thaliana WRKY transcription factor 43 splice variant 2 (WRKY43) mRNA, complete cds; alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850446.25e-44WRKY DNA-binding protein 43
SwissprotQ8GY112e-42WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBLV4KMW82e-39V4KMW8_EUTSA; Uncharacterized protein
STRINGBostr.25993s0157.1.p6e-51(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.23e-47WRKY DNA-binding protein 43
Publications ? help Back to Top
  1. Geilen K,Heilmann M,Hillmer S,Böhmer M
    WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
    Sci Rep, 2017. 7(1): p. 14235
    [PMID:29079824]