PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0201.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 372aa    MW: 41102.4 Da    PI: 9.3546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0201.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.6e-07151170626
                           -SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                           C+++ + G Ck G++C F H+
  Bostr.25993s0201.1.p 151 CKYWKA-GNCKKGEQCEFLHS 170
                           ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-5143170IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5145171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6146170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896150172IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4151170IPR000571Zinc finger, CCCH-type
SMARTSM003204.5E-5176215IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.9E-27178229IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509787.32E-27179366IPR017986WD40-repeat-containing domain
PfamPF004003.6E-4180215IPR001680WD40 repeat
PROSITE profilePS5008213.182183224IPR001680WD40 repeat
PROSITE profilePS5029414.476183323IPR017986WD40-repeat-containing domain
PROSITE patternPS006780202216IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.103.9E-27266364IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.063277314IPR001680WD40 repeat
PROSITE profilePS5008211.645284323IPR001680WD40 repeat
PfamPF004000.003285314IPR001680WD40 repeat
PROSITE patternPS006780301315IPR019775WD40 repeat, conserved site
SMARTSM0032016317360IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MYSMNHKAPR RYSQGRNFGV DRQQNFTADI VPRRSSIPYD KRVKKSPYNG SRNLVWTSKE  60
FQASEGNRPR KNDAYRSTNS PVSSTGYHVS NQPRKNDAYR SMNSPVSGTG NRVSNQPRKN  120
VVYGSRSSSI SGSRVWRLGD NSNPKFRECV CKYWKAGNCK KGEQCEFLHS WCCFPGLVMV  180
ATLEGHKKDI KGIALPQGSD KLYSASGDGA LRIWDCHTGQ CVHEINLQAE AGSLISEGPW  240
DFLGLPNAVK AFNVQTCKDL HLNGSVGGQV NAMAVGNGML FAGTSGHSGE VKCFVVGGQR  300
LYSGSVDKTI KVWDLDTLQC IMTLRQHSDT SVHALCGLHD AEARPIIFCF YQNGTVGIYD  360
LPTFEERGMM F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mzh_A5e-13181329215390Dynein assembly factor with WDR repeat domains 1
5mzh_B5e-13181329215390Dynein assembly factor with WDR repeat domains 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0201.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100641.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR91e-164C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A087H5G00.0A0A087H5G0_ARAAL; Uncharacterized protein
STRINGBostr.25993s0201.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.11e-160C3H family protein