PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0262.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 329aa    MW: 37670.2 Da    PI: 4.8697
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0262.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039426123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ykC  C ksF +   L  H+r+H
  Bostr.25993s0262.1.p  4 YKCRFCFKSFINGRALGGHMRSH 26
                          9*********************9 PP
2zf-C2H215.35.6e-05210232123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC+ Cgk+F++   L  H  +H
  Bostr.25993s0262.1.p 210 FKCETCGKVFKSYQALGGHRASH 232
                           89***********9999998887 PP
3zf-C2H211.90.00067254276123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C ++F++   L  H r+H
  Bostr.25993s0262.1.p 254 HECPICFRVFTSGQALGGHKRSH 276
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.58E-9326No hitNo description
PfamPF139127.9E-4327IPR007087Zinc finger, C2H2
SMARTSM003550.036426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.58E-9205232No hitNo description
PfamPF139122.1E-11209234IPR007087Zinc finger, C2H2
SMARTSM003550.013210232IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.655210237IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182254276IPR007087Zinc finger, C2H2
PfamPF139121.7E-10254276IPR007087Zinc finger, C2H2
SMARTSM003550.15254276IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MERYKCRFCF KSFINGRALG GHMRSHMLSL SAKRELYELT GEEEEEEERP SQLSDDDDTE  60
SDASSSSDDE EEDHVNCGEF DHLKSNRIQM VDDELEFDFA EEDDVESETE SSRINPTRRR  120
SKRTRKLGSF DFDFKKLKTS QPGELVTEPE HHSSASDTTT EEDLAFCLIM LSRDKWKQHE  180
KKTKQSVEED DETDHECEDY KSSTNRRGRF KCETCGKVFK SYQALGGHRA SHKKNKACTT  240
KTEHVHGVAE KRSHECPICF RVFTSGQALG GHKRSHGSSI GAGGLSVNQF VRIDKEEEEE  300
VSMKQRMIDL NLPAPNEEDE TSLVFDEW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0262.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882791.11e-172zinc finger protein ZAT4
SwissprotQ9SHD01e-151ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLD7LBV61e-171D7LBV6_ARALL; Uncharacterized protein
STRINGBostr.25993s0262.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-126C2H2-like zinc finger protein