PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0551.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 366aa    MW: 40737.5 Da    PI: 7.641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0551.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12296341655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+el+P+     +k  + +++L  Av+YIk+Lq
  Bostr.25993s0551.1.p 296 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDFAVDYIKDLQ 341
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.494290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15293357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.67E-11294343No hitNo description
Gene3DG3DSA:4.10.280.103.8E-13295354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-9296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDSNTHNHLY DPNHISSSGS GGLLRFRSAP SSVLAAFVDV DKSGFDSDRL LSRFVSSDGG  60
NEDLGSPKFE DKSPVSLTNT SVSYAATLPP PQPEPSSFLG LPPHYPRQSQ GMMNSIGLDQ  120
FLGMNNHHTK PLESNLLRQS SSPAGMFSNL SDRNGYGSMR NLMNYEEDEE SPSNSNGLRR  180
HCSLSSRPPS SLGMLSQIPE IAPETNFQYS HWNDPSNFID NLSSLKRETE DDGKLFLGAQ  240
TGESGNRMQL LSHHLNLPKS SSTASDMVSV DKYLQLQDSV PCKIRAKRGC ATHPRSIAER  300
VRRTRISERM RKLQELVPNM DKQTNTSDML DFAVDYIKDL QRQYKILNEN RANCKCMMNK  360
EKKSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0551.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2289810.0AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05.
GenBankBT0153390.0BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds.
GenBankBT0157120.0BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881830.10.0transcription factor bHLH130 isoform X2
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLD7LI370.0D7LI37_ARALL; Basic helix-loop-helix family protein
STRINGBostr.25993s0551.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]