PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0598.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 281aa    MW: 31236.4 Da    PI: 8.5818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0598.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034215237223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp Cg  Fs+  +L+ H  + H
  Bostr.25993s0598.1.p 215 VCPQCGAKFSSVTTLVEHVEKrH 237
                           6*****************99888 PP
2zf-C2H2201.9e-06252274223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp+C++ F+++ +L++Hi + H
  Bostr.25993s0598.1.p 252 VCPKCSRGFRDPVDLVNHIERdH 274
                           7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.58E-12457No hitNo description
PROSITE profilePS510397.7741056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.1E-101152IPR000058Zinc finger, AN1-type
SMARTSM001541.4E-61352IPR000058Zinc finger, AN1-type
PfamPF014283.8E-131349IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.6E-1091143IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.75E-893142No hitNo description
PROSITE profilePS510398.21898147IPR000058Zinc finger, AN1-type
SMARTSM001540.0068101142IPR000058Zinc finger, AN1-type
PfamPF014283.2E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.023214237IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868214242IPR007087Zinc finger, C2H2
PROSITE patternPS000280216237IPR007087Zinc finger, C2H2
PfamPF056051.4E-6216275IPR008598Drought induced 19 protein type, zinc-binding domain
Gene3DG3DSA:3.30.160.604.6E-4218237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.078251279IPR007087Zinc finger, C2H2
SMARTSM003557.9251274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDVCKQ IDFLPFTCDR CLQVFCLDHR SYMKHTCPKG DREDVTVVIC  60
PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKAKKKKK CPVPRCKEQL TFSNTIKCRD  120
CNIDHCLKHR FGPDHSCPGP RKLSFMGFLS SSSSSSRKEA KTTRPNKAPA STSPSSSSRW  180
SNLLSSAEAG ISRLGNDISQ KLQFSSGSND GIVEVCPQCG AKFSSVTTLV EHVEKRHERN  240
KKQNHGKVTV DVCPKCSRGF RDPVDLVNHI ERDHRGTSEA *
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0598.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505969.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-180SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLR0HR081e-179R0HR08_9BRAS; Uncharacterized protein
STRINGBostr.25993s0598.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-172C2H2 family protein