PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2651s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 200aa    MW: 22477.4 Da    PI: 9.9156
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2651s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573606.3e-1927823997
               DUF573 39 efvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                         + +kksisf+vsk q+ eK+r+LKkK+ +k k+   g+ep+f k+hd+k+fel+k +Wg
  Bostr.2651s0001.1.p 27 DLLKKSISFDVSKVQFREKLRSLKKKYIGKDKN---GEEPTFVKPHDRKTFELAKLVWG 82
                         578***************************999...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.8E-142782IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSRKPVNPPI SSSDEDEVDT SSEEEDDLLK KSISFDVSKV QFREKLRSLK KKYIGKDKNG  60
EEPTFVKPHD RKTFELAKLV WGANGMALES VVKSNGKSSK KSRKSKKVES VTNKGEVSLL  120
GASEIDTFVK SSLVKSLAGF GVDELATQQG WSRLASEDKK RFEEQWKALQ VREFEFYSQK  180
SVFIHEVVTK FAEAFRSSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2651s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458551.11e-76PREDICTED: probable transcription factor At1g11510
SwissprotC0SUU65e-53STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLR0I1M21e-61R0I1M2_9BRAS; Uncharacterized protein
STRINGBostr.2651s0001.1.p1e-139(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.16e-51DNA-binding storekeeper protein-related transcriptional regulator