PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26527s0251.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NF-YC

Protein Properties

Length: 256aa MW: 28452.4 Da PI: 5.6402

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26527s0251.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	51.8	1.8e-16	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki+++de+v +i+ +P l+ska elf+ +l ++ + + +t++ ++++v + fdfl ++v + Bostr.26527s0251.1.p 6 QTRFPATRIKKIMQTDEEVGKIAMAVPLLISKALELFLQDLCNHTYDITLSRGAKTVNSFHLKQCVHAFNGFDFLRETVGK 86 789************************************************************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-25	2	72	IPR009072	Histone-fold
Pfam	PF00808	1.0E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.04E-17	18	87	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLISKALE LFLQDLCNHT YDITLSRGAK 60 TVNSFHLKQC VHAFNGFDFL RETVGKVPDL GGSDAEDQSA TKRRKLVDCN DEDVKSTQMH 120 EVKHSGSGRG RRGRGRGRGG GRTGCGLSLK FEEDLEDGSP ESSRSTSPEN GSLSHDDTSW 180 KKVASHNNHS NVRNFDLNVG LDDNGDTATW QERRLEGSLD WPLLGMNEMK IDPDQQQQAS 240 ANDEEDYDEK SIDQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-24	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	138	RGRRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26527s0251.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002873950.2	1e-140	dr1-associated corepressor
TrEMBL	A0A178UFV7	1e-133	A0A178UFV7_ARATH; Uncharacterized protein
STRING	Bostr.26527s0251.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13968	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	1e-136	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Bostr.26527s0251.1.p