PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26527s0329.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

ZF-HD

Protein Properties

Length: 108aa MW: 12246.2 Da PI: 8.7678

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26527s0329.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	64.9	1.5e-20	50	105	4	56
ZF-HD_dimer 4 vrYkeClkNhAaslGgha....vDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 v+Y ClkNh a++Gg CgE+m + geegt++al CaACgCHR+FH ++ Bostr.26527s0329.1.p 50 VKYGRCLKNHTAHMGGRCslrfSPTCGEYMVA-GEEGTPEALSCAACGCHRSFHEKN 105 89************873332579**9.999****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.6E-4	10	36	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-10	50	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.8E-19	50	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.8E-17	51	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	15.082	52	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MSKWREKLHF LACREEGTPE AFSCRGCGCH VCFHWKYVKK YFRRLSTAIV KYGRCLKNHT 60 AHMGGRCSLR FSPTCGEYMV AGEEGTPEAL SCAACGCHRS FHEKNYL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26527s0329.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010420655.1	1e-48	PREDICTED: zinc-finger homeodomain protein 8-like
TrEMBL	A0A1J3HRP4	7e-32	A0A1J3HRP4_NOCCA; Mini zinc finger protein 1
STRING	Bostr.26527s0329.1.p	1e-73	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17489	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	8e-16	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Bostr.26527s0329.1.p