PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0356.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 477aa    MW: 50475.3 Da    PI: 7.7594
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0356.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-125378227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          +++ C +++rtG C yG+rC+F+H++
  Bostr.26527s0356.1.p 53 DEPDCIYYLRTGVCGYGSRCRFNHPR 78
                          6899********************96 PP
2zf-CCCH36.67.4e-12100124327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C++f+rtGtCk+G++Ck++H++
  Bostr.26527s0356.1.p 100 QPMCQHFMRTGTCKFGASCKYHHPR 124
                           689********************96 PP
3zf-CCCH39.87.3e-13153177226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ++++C++f+rtG+Ck+G++C+F+H+
  Bostr.26527s0356.1.p 153 GEKECSYFMRTGQCKFGSTCRFHHP 177
                           7899********************9 PP
4zf-CCCH41.22.7e-13306331227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            +++C++f+rtG Ck+G++C+F+H++
  Bostr.26527s0356.1.p 306 EQPECQYFMRTGDCKFGSSCRFHHPM 331
                           5799********************95 PP
5zf-CCCH29.61.2e-09353376427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           + C +f + G+Ck+G+ CkF H++
  Bostr.26527s0356.1.p 353 AQCTHFEEHGICKFGPACKFDHSM 376
                           67********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0985179IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-45178IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-95378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-65680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-55778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.79897125IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-597124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5102124IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9103124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45151179IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6151178IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10153177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6154178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4157176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798304332IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6304331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6305332IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10307331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5310331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019349377IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4349376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5353377IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7353375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4355375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MERYGGAGEE KSRSDPSLEW TATGNETGIE ASMWRLGLRG GGGGGGSFPE RPDEPDCIYY  60
LRTGVCGYGS RCRFNHPRNR APVLGGLRTE AGEFPERIGQ PMCQHFMRTG TCKFGASCKY  120
HHPRQGGGGG GGGGEDSVTP ISLNYMGFPL RPGEKECSYF MRTGQCKFGS TCRFHHPVPP  180
GVQAPSQQQQ LSAGPTMYPS LQSQSVPSSQ QYGVVLARPQ LLPGSYVQSP YGYSQMVLPP  240
GMVPYSGWNP YQASVSAIPS PGTQPSMRNS SVYGITPLSP SAPAYQSAPS STGVSNKEQT  300
FPQRPEQPEC QYFMRTGDCK FGSSCRFHHP MEAASPKEIT LSHIGLPLRP GAAQCTHFEE  360
HGICKFGPAC KFDHSMGSSS LSYSPSASSL TDMPVAPYPL GSSSLGTLAP SSSSSSDQRT  420
ELLSPSSIKP IITTVGSETV ASGVSSSSPT TSCVSHPEPA ETNKGDSASI EAKTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26527s0356.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2301750.0AK230175.1 Arabidopsis thaliana mRNA for zinc finger like protein, complete cds, clone: RAFL22-89-O03.
GenBankBT0108860.0BT010886.1 Arabidopsis thaliana At5g18550 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287665.10.0zinc finger CCCH domain-containing protein 58 isoform X1
RefseqXP_023636660.10.0zinc finger CCCH domain-containing protein 58 isoform X1
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLR0HAE20.0R0HAE2_9BRAS; Uncharacterized protein
STRINGBostr.26527s0356.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]