PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26527s0401.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 230aa MW: 26338.3 Da PI: 9.8596

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26527s0401.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.7	2.7e-10	19	89	1	73
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkang 73 ffk+l +++ +++ + +p f++++++ +e+s +++l+ ++g sW+v++ +++++ y+++ + W +F ++ng Bostr.26527s0401.1.p 19 FFKILPRAYLSSEIMRGIPLIFIKSISE-EESSAKMVLKVSWGSSWTVRI--SRNPSFYFMEkNEWDQFLSDNG 89 8999999999999999*****99965.57899************..9999997766266******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.0E-9	12	89	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-8	13	89	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.29E-8	17	89	No hit	No description
SMART	SM01019	0.0019	19	112	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.6E-9	19	89	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.8E-5	164	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.89E-7	166	219	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDKNRAFGKI MDDADNPGFF KILPRAYLSS EIMRGIPLIF IKSISEEESS AKMVLKVSWG 60 SSWTVRISRN PSFYFMEKNE WDQFLSDNGN NGKELLRPRK SATTVASSSG LNKREQRKNI 120 YKDVKKKEVE SSSESSYPGL ISAESKKNKM KVETVCDDSE DDSSSIVPEF TINIKKSYLI 180 FLGIPKMFME LHMPKETTMF KIHDPEGKKS WDVMYKITGI QSRFVWPKI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26527s0401.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY087853	1e-81	AY087853.1 Arabidopsis thaliana clone 38961 mRNA, complete sequence.
GenBank	BT004099	1e-81	BT004099.1 Arabidopsis thaliana clone RAFL15-45-L21 (R20966) unknown protein (At5g18090) mRNA, complete cds.
GenBank	BT005553	1e-81	BT005553.1 Arabidopsis thaliana clone U20966 unknown protein (At5g18090) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006290043.1	1e-108	B3 domain-containing protein At5g18090
Swissprot	Q9FK61	1e-104	Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBL	R0FLU3	1e-106	R0FLU3_9BRAS; Uncharacterized protein
STRING	Bostr.26527s0401.1.p	1e-166	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	2e-95	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.26527s0401.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]