PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0404.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 267aa    MW: 31005.8 Da    PI: 8.6673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0404.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.92.7e-25141443128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya..tgkrknra....tksgy 82 
                           +GfrFhP+d+el+++yL +kv++k+++++e  ++  iy  ePw+  + +++   e +ew++F++r + ++  t+k ++r+    t +g 
  Bostr.26527s0404.1.p  14 VGFRFHPSDQELIMYYLGPKVAKKSNKEFELEDKNYIYAKEPWSSTH-TETdffEPNEWFYFVTRIQVSEnvTEKCTSRKvkgeTCEGC 101
                           7************************99988677778********973.222345778*******9998873334444454344477*** PP

                   NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           Wka gk ++v+s+ +ge++g k++L f  g++   + + W+m ey+ 
  Bostr.26527s0404.1.p 102 WKAPGKLRDVVSEdTGEVIGEKRSLSFK-GET---KASGWTMTEYST 144
                           ***********9978899*********8.443...4589******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.08612170IPR003441NAC domain
SuperFamilySSF1019414.45E-2513150IPR003441NAC domain
PfamPF023652.7E-1814143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSMVEKYYDK EQEVGFRFHP SDQELIMYYL GPKVAKKSNK EFELEDKNYI YAKEPWSSTH  60
TETDFFEPNE WFYFVTRIQV SENVTEKCTS RKVKGETCEG CWKAPGKLRD VVSEDTGEVI  120
GEKRSLSFKG ETKASGWTMT EYSTTVAHSK IKFSAMFKDH DSVFCKNSAF SDDFFDGRSS  180
VGHFRLISDN EASTFWLTES RRSFPTVNQK SMSFQRYNSV GKADKITMVN QWKSDRFSIK  240
VTTDFPRTRN SKINNKINLL RLCDRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26527s0404.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877802.13e-74protein CUP-SHAPED COTYLEDON 1
TrEMBLR0HBL02e-68R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.26527s0404.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.17e-40NAC domain containing protein 88