PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0003.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 126aa    MW: 14851 Da    PI: 6.2685
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.8e-1021121394
                           EE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                           k lt  d   sg l+lpk+ +e++          ++++  ++++ +  e  +s + +l+  k+ g+y+l++GW +++ka+g k++D + 
  Bostr.26675s0003.1.p  21 KNLTDTDLRYSGSLILPKQDFEKIiremerafveNLENGVEVKVHIIEEGQESDDYRLTLVKYNGSYMLKRGWYNMAKAKGYKTNDEIR 109
                           6778888889999***********999999988733333344455555555555555555***************************99 PP

                           EEE-SSSEE..EE CS
                    B3  82 Fkldgrsefelvv 94 
                           ++ d+  ++++++
  Bostr.26675s0003.1.p 110 LMWDK-CSGRFFF 121
                           99554.6666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-1316124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1017120IPR015300DNA-binding pseudobarrel domain
CDDcd100177.51E-817125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MPQELDLELG LAPYDPWVLK KNLTDTDLRY SGSLILPKQD FEKIIREMER AFVENLENGV  60
EVKVHIIEEG QESDDYRLTL VKYNGSYMLK RGWYNMAKAK GYKTNDEIRL MWDKCSGRFF  120
FHHIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154481e-112AC015448.4 Arabidopsis thaliana chromosome I BAC T14L22 genomic sequence, complete sequence.
GenBankCP0026841e-112CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5F191e-112AC006216.1 Arabidopsis thaliana chromosome 1 BAC F5F19 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463406.11e-65PREDICTED: putative B3 domain-containing protein At1g51970
SwissprotQ9ZU261e-61Y1197_ARATH; Putative B3 domain-containing protein At1g51970
TrEMBLR0GPP94e-64R0GPP9_9BRAS; Uncharacterized protein
STRINGBostr.26675s0003.1.p4e-89(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1494634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.11e-07B3 family protein