PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0029.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Dof
Protein Properties Length: 210aa    MW: 23141.6 Da    PI: 8.1111
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.83.1e-403595262
                zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                          ++++l+cprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn+k+s
  Bostr.26675s0029.1.p 35 EQEQLQCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNNKRS 95
                          57899****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-242487IPR003851Zinc finger, Dof-type
PfamPF027013.4E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4133993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MQDMTSAAAV AAAAYYHQSM MMTTAKQKNQ PELPEQEQLQ CPRCDSPNTK FCYYNNYNLS  60
QPRHFCKNCR RYWTKGGALR NIPVGGGSRK NNKRSSSSSS SSSSNLNNQI FAVKPDDHHQ  120
SGSGSKLDEE QERVTDQDMD PTRMLYGLPV GDPNGGSCSS LLASNMQMGG LVYESGSRWY  180
PGMDLGLGSG LRRSDDTWTD LAMNRAEKN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0029.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868162.11e-118dof zinc finger protein DOF1.7
SwissprotO821551e-117DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLD7KHU91e-117D7KHU9_ARALL; Uncharacterized protein
STRINGBostr.26675s0029.1.p1e-156(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-95DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]