PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0074.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 380aa    MW: 41851.4 Da    PI: 7.1533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12316361655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR +i +++ +L++l+P+     ++  + a++L +Av+YIk+Lq
  Bostr.26675s0074.1.p 316 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 361
                           689*********************7....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16313376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-11314365No hitNo description
Gene3DG3DSA:4.10.280.101.3E-15315372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MESEFQQHHN FLIHHDHQHQ RTRNSGLTRY QSAPSSYFSS FSESIEEFLD RPTSPETERI  60
LSGFLQTTDT SNNVDSFLHH TFNSDGTEKK PPEVKTEEEE TEIPVTATAM EVGDVEISVT  120
SDSIGYASVS RNLGGQNKRP REKDDRTPVN NLARHNSSPA GLFSSIDVET AYAAVMKSMG  180
GFGGSDVMNT SNTAASTLTP RSKLPPSASR AMSPISEVDV KPAFSSRLPP RTLSGGFNRS  240
FGNEGSASSK LTAIARTQSG GLDQYKTKDE DSTSRRPPLA HHMSLPKSLS DIEQLLSDSI  300
PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM DTQTNTADML DLAVQYIKDL  360
QEQVKALEET RARCRCSSA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0074.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0349410.0AY034941.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
GenBankAY0631200.0AY063120.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869674.10.0transcription factor bHLH122
SwissprotQ9C6900.0BH122_ARATH; Transcription factor bHLH122
TrEMBLD7KHN30.0D7KHN3_ARALL; Basic helix-loop-helix family protein
STRINGBostr.26675s0074.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.10.0bHLH family protein
Publications ? help Back to Top
  1. Yang Z, et al.
    Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.
    Mol. Cell Proteomics, 2013. 12(12): p. 3559-82
    [PMID:24043427]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K
    Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation.
    Plant J., 2016. 87(6): p. 559-67
    [PMID:27227462]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Takahashi Y,Ebisu Y,Shimazaki KI
    Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors.
    Plant Physiol., 2017. 174(2): p. 815-822
    [PMID:28438792]